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Can pbx use polished genome files as input? #6

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yweii opened this issue Jan 10, 2023 · 2 comments
Open

Can pbx use polished genome files as input? #6

yweii opened this issue Jan 10, 2023 · 2 comments

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@yweii
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yweii commented Jan 10, 2023

Hi, I'm new to pbx.
Can pbx use the polished genome files as input?
Here is the reference
https://nph.onlinelibrary.wiley.com/doi/10.1111/nph.17877
@njbooher
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Not easily.

If you just want to extract TALE sequences from a finished genome then AnnoTALE would probably be better.

http://www.jstacs.de/index.php/AnnoTALE

@yweii
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yweii commented May 7, 2023

Hi, thank you for your prompt reply.
I'm sorry that I wasn't able to reply to you in a timely manner.
I also want to ask how determine if the smaller circular contigs are plasmids?

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@njbooher @yweii