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Support for A2M/A3M files #724

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JHKru opened this issue Dec 19, 2024 · 1 comment
Open

Support for A2M/A3M files #724

JHKru opened this issue Dec 19, 2024 · 1 comment
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@JHKru
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JHKru commented Dec 19, 2024

Reading/writing MSAs from/to A3M files might be a useful addition to Biotite.
A2M/A3M files are quite commonly accepted as input/produced by alignment programs
or protein structure prediction pipelines (e.g. MMseqs2, RoseTTAFold and AlphaFold3).
The format itself offers additional notation for inserted amino acids.

@JHKru JHKru changed the title Support for A3M/AM files Support for A2M/A3M files Dec 19, 2024
@padix-key
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padix-key commented Dec 20, 2024

I did not know RoseTTAFold also uses A3M format. I already have some functionality regarding this for private usage, so I will sanitize the code and prepare a PR for this in the upcoming weeks

@padix-key padix-key self-assigned this Dec 20, 2024
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