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Use PCM annotation for finding inter-residue bonds #671

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padix-key opened this issue Oct 10, 2024 · 0 comments
Open

Use PCM annotation for finding inter-residue bonds #671

padix-key opened this issue Oct 10, 2024 · 0 comments
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@padix-key
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padix-key commented Oct 10, 2024 •
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The PDB annotates now protein chemical modifications (PCMs) in the CCD (https://www.wwpdb.org/news/news?year=2024#662fa1a565d8a8cacaf76f9c). These annotation describe also where such PCMs bind to a protein chain via pdbx_chem_comp_pcm.comp_id_linking_atom and pdbx_chem_comp_pcm.modified_residue_id_linking_atom.

We could use this information in connect_via_residue_names() to find more inter-residue bonds.
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