From 04ab0235deabe4fc7c796a14a50dc8ace48029b7 Mon Sep 17 00:00:00 2001 From: Patrick Kunzmann Date: Mon, 9 Sep 2024 08:17:34 +0200 Subject: [PATCH] fixup! Add positional substitution matrices --- src/biotite/sequence/seqtypes.py | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/biotite/sequence/seqtypes.py b/src/biotite/sequence/seqtypes.py index 3c636f95b..0234776a1 100644 --- a/src/biotite/sequence/seqtypes.py +++ b/src/biotite/sequence/seqtypes.py @@ -608,7 +608,9 @@ class PositionalSequence(Sequence): """ A sequence where each symbol is associated with a position. - Its symbols are + For each individual position the sequence contains a separate + :class:`PositionalSequence.Symbol`, encoded by a custom alphabet for this sequence. + In consequence the symbol code is the position in the sequence itself. This is useful for aligning sequences based on a position-specific substitution matrix.