From 392df191b2f60dbc79843cd8e113c770996b100e Mon Sep 17 00:00:00 2001 From: Yao Yao Date: Wed, 11 Oct 2023 14:32:05 -0700 Subject: [PATCH] fix a typo --- src/hub/dataload/sources/dbnsfp/dbnsfp_mapping.py | 2 +- src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/hub/dataload/sources/dbnsfp/dbnsfp_mapping.py b/src/hub/dataload/sources/dbnsfp/dbnsfp_mapping.py index 2bf02501..954b1160 100644 --- a/src/hub/dataload/sources/dbnsfp/dbnsfp_mapping.py +++ b/src/hub/dataload/sources/dbnsfp/dbnsfp_mapping.py @@ -127,7 +127,7 @@ "type": "keyword", "normalizer": "keyword_lowercase_normalizer" }, - "genecode_basic": { + "gencode_basic": { "type": "keyword", "normalizer": "keyword_lowercase_normalizer" }, diff --git a/src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py b/src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py index ea299779..ebd2eb3b 100644 --- a/src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py +++ b/src/hub/dataload/sources/dbnsfp/dbnsfp_parser.py @@ -251,7 +251,7 @@ def split_dedup(values: list, sep: str, na_values: set = NA_VALUES): Column("HGVSc_VEP", tag=COLUMN_TAG.HGVS_CODING), # ditto Column("HGVSp_VEP", tag=COLUMN_TAG.HGVS_PROTEIN), # ditto Column("APPRIS", transform=split_str), - Column("GENCODE_basic", dest="genecode_basic", transform=split_str), + Column("GENCODE_basic", dest="gencode_basic", transform=split_str), Column("TSL", transform=split_int), Column("VEP_canonical", dest="vep_canonical", transform=split_str), Column("cds_strand", dest="cds_strand", transform=split_str),