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api_list.yaml
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api_list.yaml
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---
# APIs in this list are accessible by the main endpoints v1/query and v1/asyncquery
include:
# external (not Su / Wu Lab), non-TRAPI APIs
# annotated with SmartAPI x-bte
# also accessible by v1/team/Service Provider/ endpoints and by api-specific endpoints
- id: d22b657426375a5295e7da8a303b9893
name: Monarch API
- id: 0212611d1c670f9107baf00b77f0889a
name: CTD API
primarySource: true
- id: 326eb1e437303bee27d3cef29227125d
name: Complex Portal Web Service
primarySource: true
- id: 43af91b3d7cae43591083bff9d75c6dd
name: EBI Proteins API
- id: dca415f2d792976af9d642b7e73f7a41
name: LitVar API
- id: 1f277e1563fcfd124bfae2cc3c4bcdec
name: QuickGO API
- id: 1c056ffc7ed0dd1229e71c4752239465
name: Ontology Lookup Service API
# internal (Su / Wu Lab), non-TRAPI: "pending" BioThings APIs
# annotated with SmartAPI x-bte
# also accessible by v1/team/Service Provider/ endpoints and by api-specific endpoints
- id: 68f12100e74342ae0dd5013d5f453194
name: BioThings AGR API
- id: 38e9e5169a72aee3659c9ddba956790d
name: BioThings BindingDB API
- id: 55a223c6c6e0291dbd05f2faf27d16f4
name: BioThings BioPlanet Pathway-Disease API
- id: b99c6dd64abcefe87dcd0a51c249ee6d
name: BioThings BioPlanet Pathway-Gene API
- id: 00fb85fc776279163199e6c50f6ddfc6
name: BioThings DDInter API
- id: e3edd325c76f2992a111b43a907a4870
name: BioThings DGIdb API
- id: a7f784626a426d054885a5f33f17d3f8
name: BioThings DISEASES API
- id: 1f47552dabd67351d4c625adb0a10d00
name: BioThings EBIgene2phenotype API
- id: f1b8f64c316a01d1722f0fb842499fe5
name: BioThings FooDB API
- id: 895ec14a3650ec7ad85959a2d1554e2f
name: BioThings FoodData Central API
- id: cc857d5b7c8b7609b5bbb38ff990bfff
name: BioThings GO Biological Process API
- id: f339b28426e7bf72028f60feefcd7465
name: BioThings GO Cellular Component API
- id: 34bad236d77bea0a0ee6c6cba5be54a6
name: BioThings GO Molecular Function API
- id: 316eab811fd9ef1097df98bcaa9f7361
name: BioThings GTRx API
- id: a5b0ec6bfde5008984d4b6cde402d61f
name: BioThings HPO API
- id: 32f36164fabed5d3abe6c2fd899c9418
name: BioThings IDISK API
- id: e9eb40ff7ad712e4e6f4f04b964b5966
name: BioThings InnateDB API
- id: 77ed27f111262d0289ed4f4071faa619
name: BioThings MGIgene2phenotype API
- id: edeb26858bd27d0322af93e7a9e08761
name: BioThings PFOCR API
- id: b772ebfbfa536bba37764d7fddb11d6f
name: BioThings RARe-SOURCE API
- id: 1138c3297e8e403b6ac10cff5609b319
name: BioThings repoDB API
- id: 03283cc2b21c077be6794e1704b1d230
name: BioThings Rhea API
- id: 1d288b3a3caf75d541ffaae3aab386c8
name: BioThings SEMMEDDB API
- id: b48c34df08d16311e3bca06b135b828d
name: BioThings SuppKG API
- id: e481efd21f8e8c1deac05662439c2294
name: Biothings Therapeutic Target Database API
- id: ec6d76016ef40f284359d17fbf78df20
name: BioThings UBERON API
# internal (Su / Wu Lab), non-TRAPI: Core BioThings APIs
# annotated with SmartAPI x-bte
# also accessible by v1/team/Service Provider/ endpoints and by api-specific endpoints
- id: 8f08d1446e0bb9c2b323713ce83e2bd3
name: MyChem.info API
- id: 671b45c0301c8624abbd26ae78449ca2
name: MyDisease.info API
- id: 59dce17363dce279d389100834e43648
name: MyGene.info API
- id: 09c8782d9f4027712e65b95424adba79
name: MyVariant.info API
# non-TRAPI: pending BioThings APIs made in collab with Multiomics Provider
# annotated with SmartAPI x-bte
# also accessible by v1/team/Service Provider/ and v1/team/Multiomics Provider endpoints, and by api-specific endpoints
- id: adf20dd6ff23dfe18e8e012bde686e31
name: Multiomics BigGIM-DrugResponse KP API
- id: d86a24f6027ffe778f84ba10a7a1861a
name: Multiomics EHR Risk KP API
- id: 02af7d098ab304e80d6f4806c3527027
name: Multiomics Wellness KP API
# non-TRAPI: pending BioThings APIs made in collab with Text Mining Provider
# annotated with SmartAPI x-bte
# also accessible by v1/team/Service Provider/ and v1/team/Text Mining Provider endpoints, and by api-specific endpoints
- id: 978fe380a147a8641caf72320862697b
name: Text Mining Targeted Association API
# TRAPI (Translator standard) APIs: Automat
# not accessible by team or api-specific endpoints
# Notes: We don't ingest the following:
# - Automat-robokop: seems to repeat a lot of data that is in the other APIs
- id: f82c01b15c46e024212c1a3271aaef0b
name: Automat-ctd(Trapi v1.5.0)
- id: 673b9fc76973dfa5fe3ed151fdbfc807
name: Automat-drug-central(Trapi v1.5.0)
- id: eef72049e4e01c020b7799f711e0e65b
name: Automat-gtex(Trapi v1.5.0)
- id: 759df287a21c30cd514df323be02a84b
name: Automat-gtopdb(Trapi v1.5.0)
- id: 349fed5531c094c33f10c071efe9d0de
name: Automat-gwas-catalog(Trapi v1.5.0)
- id: a5fe24f987331b58191e67598118f369
name: Automat-hetionet(Trapi v1.5.0)
- id: 8671309d2b94e413a4c1f9a9f82e4660
name: Automat-hgnc(Trapi v1.5.0)
- id: 0a1c0f46f4950b82b1aa7dad27aad10a
name: Automat-hmdb(Trapi v1.5.0)
- id: cb7a43d444cb3dcbe8e3c78d314334cf
name: Automat-human-goa(Trapi v1.5.0)
- id: c64d583402f21cc85810d33befe49c86
name: Automat-icees-kg(Trapi v1.5.0)
- id: b4023595664163e0aec5e825da150e16
name: Automat-intact(Trapi v1.5.0)
- id: 3f78d3fb8a7a577fbc7cc0a913ac3fc5
name: Automat-panther(Trapi v1.5.0)
- id: 1f057c53d42694686369f0e542f965c6
name: Automat-pharos(Trapi v1.5.0)
- id: 2aca41fc6c3dc426ec6583d42603be02
name: Automat-viral-proteome(Trapi v1.5.0)
# TRAPI (Translator standard) APIs: COHD
# not accessible by team or api-specific endpoints
# notes on COHD:
# - DON'T INGEST 'Columbia Open Health Data (COHD)'/70117385218edc9bc01633829011dfcf
# IT IS NOT TRAPI (and may be outdated?)
# - COHD for COVID-19 should work but BTE gets a 500 when retrieving meta_knowledge_graph...
# smartapi ID fc8245e92c970298449294fc04211869
- id: d4290b6b5741e6da6cc6a6f42e0cfdb5
name: COHD TRAPI
# TRAPI (Translator standard) APIs: CHP
# not accessible by team or api-specific endpoints
- id: 412af63e15b73e5a30778aac84ce313f
name: Connections Hypothesis Provider API
# TRAPI (Translator standard) APIs: Multiomics (made with RTX team Plover)
# not accessible by team or api-specific endpoints
- id: e51073371d7049b9643e1edbdd61bcbd
name: Clinical Trials KP - TRAPI 1.5.0
includeFlipped: true
- id: a8be4ea3fe8fa80a952ead0b3c5e4bc1
name: Microbiome KP - TRAPI 1.5.0
includeFlipped: true
- id: 1b6de23ed3c4e0713b20794477ba1e39
name: Multiomics KP - TRAPI 1.5.0
includeFlipped: true
exclude: [] # if adding exclude remove these square brackets