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investigate PubTator as resource for NGD calculation #515

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andrewsu opened this issue Oct 12, 2022 · 1 comment
Open

investigate PubTator as resource for NGD calculation #515

andrewsu opened this issue Oct 12, 2022 · 1 comment
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enhancement New feature or request

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@andrewsu
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In #326, we implemented an NGD scoring system based on semmeddb. As a low priority item, we could also investigate creating an NGD service based on Pubtator, which presumably has significantly better performance on NER. Pubtator files are automatically updated for download at https://ftp.ncbi.nlm.nih.gov/pub/lu/PubTatorCentral/. We'd want to confirm that no one else in Translator had already done this.

@andrewsu andrewsu added the enhancement New feature or request label Oct 12, 2022
@erikyao erikyao self-assigned this Jan 19, 2023
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erikyao commented Jan 19, 2023

TODO: Consider implementing NGD using Painless (scripting on ES side)

@tokebe tokebe mentioned this issue Aug 1, 2023
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