Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

ICD-O topography codes #1169

Open
bgyori opened this issue Aug 14, 2024 · 1 comment
Open

ICD-O topography codes #1169

bgyori opened this issue Aug 14, 2024 · 1 comment

Comments

@bgyori
Copy link
Contributor

bgyori commented Aug 14, 2024

I came across ICD-O topography codes in https://github.com/cBioPortal/oncotree/blob/master/scripts/ontology_to_ontology_mapping_tool/ontology_mappings.txt with identifiers like C80.9. These codes appear to be listed here: https://cancercenter.ai/icd-o-pathology-codes/topographical-codes-icd-o-3/

There is also a list here: https://training.seer.cancer.gov/arc_neoplasms/codes.html but these don't correspond to the ones used in the mapping file above.

As far as I can tell, we don't have ICD-O topography codes in Bioregistry yet, the current entry for ICD-O (https://bioregistry.io/registry/icdo) is for what they call morphology codes. Incidentally, the URI pattern curated there seems to not work anymore so would have to be updated.

@bgyori
Copy link
Contributor Author

bgyori commented Aug 14, 2024

I wonder if it would make sense to update the current icdo to icdo.morphology and introduce a new prefix for icdo.topography. Though neither appear to be resolvable currently, having some metadata on these is still useful.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant