From 2eef10d9c3abd2c2059ae6f32191e648688a6bf3 Mon Sep 17 00:00:00 2001
From: Mufaddal Naguthanawala <110353148+nagutm@users.noreply.github.com>
Date: Mon, 21 Oct 2024 16:01:36 -0400
Subject: [PATCH] Add pephub prefix (#1194)

---------

Co-authored-by: Mufaddal Naguthanawala <m.nguthana@hotmail.com>
Co-authored-by: Charles Tapley Hoyt <cthoyt@gmail.com>
Co-authored-by: Ben Gyori <ben.gyori@gmail.com>
---
 src/bioregistry/data/bioregistry.json | 41 +++++++++++++++++++++++++++
 1 file changed, 41 insertions(+)

diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json
index c815c5af0..3c021c31d 100644
--- a/src/bioregistry/data/bioregistry.json
+++ b/src/bioregistry/data/bioregistry.json
@@ -86801,6 +86801,47 @@
       "orcid": "0000-0003-4423-4370"
     }
   },
+  "pephub": {
+    "contact": {
+      "email": "nsheffield@virginia.edu",
+      "github": "nsheff",
+      "name": "Nathan Sheffield",
+      "orcid": "0000-0001-5643-4068"
+    },
+    "contributor": {
+      "email": "m.naguthana@hotmail.com",
+      "github": "nagutm",
+      "name": "Mufaddal Naguthanawala",
+      "orcid": "0009-0009-5240-7463"
+    },
+    "description": "PEPhub is a database, web interface, and API for sharing, retrieving, and validating sample metadata. PEPhub uses Portable Encapsulated Projects (PEP) biological metadata standard to store, edit, and access PEPs in one place.",
+    "example": "geo",
+    "example_extras": [
+      "geo/gse185244",
+      "bedbase/gse198944",
+      "databio/encode_batch_1"
+    ],
+    "github_request_issue": 1194,
+    "homepage": "https://pephub.databio.org/",
+    "name": "PEPhub",
+    "pattern": "^[A-Za-z0-9_\\-]+(/[A-Za-z0-9_\\-]+)?$",
+    "publications": [
+      {
+        "doi": "10.1093/gigascience/giae033",
+        "pmc": "PMC11238423",
+        "pubmed": "38991851",
+        "title": "PEPhub: a database, web interface, and API for editing, sharing, and validating biological sample metadata",
+        "year": 2024
+      }
+    ],
+    "reviewer": {
+      "email": "b.gyori@northeastern.edu",
+      "github": "bgyori",
+      "name": "Benjamin M. Gyori",
+      "orcid": "0000-0001-9439-5346"
+    },
+    "uri_format": "https://pephub.databio.org/$1"
+  },
   "peptideatlas": {
     "biocontext": {
       "prefix": "PEPTIDEATLAS"