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meta.ttl
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meta.ttl
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@prefix : <https://w3id.org/biolink/biolinkml/meta/> .
@prefix OIO: <http://www.geneontology.org/formats/oboInOwl#> .
@prefix bibo: <http://purl.org/ontology/bibo/> .
@prefix biolinkml: <https://w3id.org/biolink/biolinkml/> .
@prefix dcterms: <http://purl.org/dc/terms/> .
@prefix meta: <https://w3id.org/biolink/biolinkml/meta/> .
@prefix metatype: <https://w3id.org/biolink/biolinkml/meta/types/> .
@prefix oslc: <http://open-services.net/ns/core#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix pav: <http://purl.org/pav/> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix schema: <http://schema.org/> .
@prefix shex: <http://www.w3.org/ns/shex#> .
@prefix skos: <http://www.w3.org/2004/02/skos/core#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
meta:metamodel a meta:SchemaDefinition ;
dcterms:license "https://creativecommons.org/publicdomain/zero/1.0/" ;
dcterms:title "Biolink Schema Metamodel" ;
pav:version "1.7.0" ;
skos:definition "A metamodel for defining biolink related schemas" ;
meta:classes meta:AltDescription,
meta:Annotatable,
meta:Annotation,
meta:ClassDefinition,
meta:Definition,
meta:Element,
meta:EnumDefinition,
meta:Example,
meta:Extensible,
meta:Extension,
meta:LocalName,
meta:PermissibleValue,
meta:Prefix,
meta:SchemaDefinition,
meta:SlotDefinition,
meta:SubsetDefinition,
meta:TypeDefinition ;
meta:default_curi_maps "semweb_context" ;
meta:default_prefix "meta" ;
meta:default_range meta:string ;
meta:emit_prefixes "IAO",
"OIO",
"biolinkml",
"dcterms",
"meta",
"owl",
"pav",
"rdf",
"rdfs",
"skos",
"xsd" ;
meta:enums meta:pv_formula_options ;
meta:generation_date "2021-01-18 15:18"^^xsd:dateTime ;
meta:id biolinkml:meta ;
meta:imports biolinkml:annotations,
biolinkml:extensions,
biolinkml:mappings,
biolinkml:types ;
meta:metamodel_version "1.7.0" ;
meta:prefixes [ meta:prefix_prefix "bibo" ;
meta:prefix_reference bibo: ],
[ meta:prefix_prefix "meta" ;
meta:prefix_reference meta: ],
[ meta:prefix_prefix "schema" ;
meta:prefix_reference schema: ],
[ meta:prefix_prefix "skos" ;
meta:prefix_reference skos: ],
[ meta:prefix_prefix "biolinkml" ;
meta:prefix_reference biolinkml: ],
[ meta:prefix_prefix "pav" ;
meta:prefix_reference pav: ],
[ meta:prefix_prefix "OIO" ;
meta:prefix_reference OIO: ],
[ meta:prefix_prefix "oslc" ;
meta:prefix_reference oslc: ] ;
meta:slots meta:abstract,
meta:alias,
meta:aliases,
meta:alt_description_source,
meta:alt_description_text,
meta:alt_descriptions,
meta:annotations,
meta:apply_to,
meta:attributes,
meta:base,
meta:broad_mappings,
meta:class_definition_apply_to,
meta:class_definition_is_a,
meta:class_definition_mixins,
meta:class_uri,
meta:classes,
meta:close_mappings,
meta:code_set,
meta:code_set_tag,
meta:code_set_version,
meta:comments,
meta:created_by,
meta:created_on,
meta:default_curi_maps,
meta:default_prefix,
meta:default_range,
meta:defining_slots,
meta:definition_uri,
meta:deprecated,
meta:deprecated_element_has_exact_replacement,
meta:deprecated_element_has_possible_replacement,
meta:description,
meta:domain,
meta:domain_of,
meta:emit_prefixes,
meta:enums,
meta:exact_mappings,
meta:examples,
meta:extension_tag,
meta:extension_value,
meta:extensions,
meta:from_schema,
meta:generation_date,
meta:id,
meta:id_prefixes,
meta:identifier,
meta:ifabsent,
meta:imported_from,
meta:imports,
meta:in_subset,
meta:inherited,
meta:inlined,
meta:inlined_as_list,
meta:inverse,
meta:is_a,
meta:is_class_field,
meta:is_usage_slot,
meta:key,
meta:last_updated_on,
meta:license,
meta:local_name_source,
meta:local_name_value,
meta:local_names,
meta:mappings,
meta:maximum_value,
meta:meaning,
meta:metamodel_version,
meta:minimum_value,
meta:mixin,
meta:mixins,
meta:modified_by,
meta:multivalued,
meta:name,
meta:narrow_mappings,
meta:notes,
meta:owner,
meta:pattern,
meta:permissible_value_is_a,
meta:permissible_value_mixins,
meta:permissible_values,
meta:prefix_prefix,
meta:prefix_reference,
meta:prefixes,
meta:pv_formula,
meta:range,
meta:readonly,
meta:related_mappings,
meta:repr,
meta:required,
meta:role,
meta:schema_definition_name,
meta:see_also,
meta:singular_name,
meta:slot_definition_apply_to,
meta:slot_definition_is_a,
meta:slot_definition_mixins,
meta:slot_definitions,
meta:slot_uri,
meta:slot_usage,
meta:slots,
meta:source_file,
meta:source_file_date,
meta:source_file_size,
meta:status,
meta:string_serialization,
meta:subclass_of,
meta:subproperty_of,
meta:subsets,
meta:symmetric,
meta:text,
meta:title,
meta:todos,
meta:tree_root,
meta:type_uri,
meta:typeof,
meta:types,
meta:union_of,
meta:usage_slot_name,
meta:value,
meta:value_description,
meta:values_from,
meta:version ;
meta:source_file "meta.yaml" ;
meta:source_file_date "Tue Jan 5 15:40:35 2021"^^xsd:dateTime ;
meta:source_file_size 32547 ;
meta:subsets meta:owl ;
meta:types meta:boolean,
meta:date,
meta:datetime,
meta:decimal,
meta:double,
meta:float,
meta:integer,
meta:ncname,
meta:nodeidentifier,
meta:objectidentifier,
meta:string,
meta:time,
meta:uri,
meta:uriorcurie .
meta:CODE skos:definition "The permissible values are the set of possible codes in the code set" .
meta:CURIE skos:definition "The permissible values are the set of CURIES in the code set" .
meta:FHIR_CODING skos:definition "The permissible values are the set of FHIR coding elements derived from the code set" .
meta:URI skos:definition "The permissible values are the set of code URIs in the code set" .
meta:date a meta:TypeDefinition ;
skos:definition "a date (year, month and day) in an idealized calendar" ;
skos:editorialNote "URI is dateTime because OWL reasoners don't work with straight date or time" ;
skos:inScheme biolinkml:types ;
meta:base "XSDDate" ;
meta:definition_uri metatype:Date ;
meta:imported_from "biolinkml:types" ;
meta:repr "str" ;
meta:uri xsd:date .
meta:decimal a meta:TypeDefinition ;
skos:definition "A real number with arbitrary precision that conforms to the xsd:decimal specification" ;
skos:inScheme biolinkml:types ;
meta:base "Decimal" ;
meta:definition_uri metatype:Decimal ;
meta:imported_from "biolinkml:types" ;
meta:uri xsd:decimal .
meta:double a meta:TypeDefinition ;
skos:definition "A real number that conforms to the xsd:double specification" ;
skos:inScheme biolinkml:types ;
meta:base "float" ;
meta:definition_uri metatype:Double ;
meta:imported_from "biolinkml:types" ;
meta:uri xsd:double .
meta:float a meta:TypeDefinition ;
skos:definition "A real number that conforms to the xsd:float specification" ;
skos:inScheme biolinkml:types ;
meta:base "float" ;
meta:definition_uri metatype:Float ;
meta:imported_from "biolinkml:types" ;
meta:uri xsd:float .
meta:nodeidentifier a meta:TypeDefinition ;
skos:definition "A URI, CURIE or BNODE that represents a node in a model." ;
skos:inScheme biolinkml:types ;
meta:base "NodeIdentifier" ;
meta:definition_uri metatype:Nodeidentifier ;
meta:imported_from "biolinkml:types" ;
meta:repr "str" ;
meta:uri shex:nonLiteral .
meta:objectidentifier a meta:TypeDefinition ;
skos:definition "A URI or CURIE that represents an object in the model." ;
skos:inScheme biolinkml:types ;
skos:note "Used for inheritence and type checking" ;
meta:base "ElementIdentifier" ;
meta:definition_uri metatype:Objectidentifier ;
meta:imported_from "biolinkml:types" ;
meta:repr "str" ;
meta:uri shex:iri .
meta:time a meta:TypeDefinition ;
skos:definition "A time object represents a (local) time of day, independent of any particular day" ;
skos:editorialNote "URI is dateTime because OWL reasoners don't work with straight date or time" ;
skos:inScheme biolinkml:types ;
meta:base "XSDTime" ;
meta:definition_uri metatype:Time ;
meta:imported_from "biolinkml:types" ;
meta:repr "str" ;
meta:uri xsd:dateTime .
meta:class_definition_apply_to a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "apply_to" ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:is_a meta:apply_to ;
meta:is_usage_slot true ;
meta:multivalued true ;
meta:owner meta:ClassDefinition ;
meta:range meta:ClassDefinition ;
meta:slot_uri meta:apply_to ;
meta:usage_slot_name "apply_to" .
meta:class_definition_is_a a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "is_a" ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:is_a meta:is_a ;
meta:is_usage_slot true ;
meta:owner meta:ClassDefinition ;
meta:range meta:ClassDefinition ;
meta:slot_uri meta:is_a ;
meta:usage_slot_name "is_a" .
meta:class_definition_mixins a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "mixins" ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:is_a meta:mixins ;
meta:is_usage_slot true ;
meta:multivalued true ;
meta:owner meta:ClassDefinition ;
meta:range meta:ClassDefinition ;
meta:slot_uri meta:mixins ;
meta:usage_slot_name "mixins" .
meta:permissible_value_is_a a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "is_a" ;
meta:domain meta:PermissibleValue ;
meta:domain_of meta:PermissibleValue ;
meta:is_a meta:is_a ;
meta:is_usage_slot true ;
meta:owner meta:PermissibleValue ;
meta:range meta:PermissibleValue ;
meta:slot_uri meta:is_a ;
meta:usage_slot_name "is_a" .
meta:permissible_value_mixins a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "mixins" ;
meta:domain meta:PermissibleValue ;
meta:domain_of meta:PermissibleValue ;
meta:is_a meta:mixins ;
meta:is_usage_slot true ;
meta:multivalued true ;
meta:owner meta:PermissibleValue ;
meta:range meta:PermissibleValue ;
meta:slot_uri meta:mixins ;
meta:usage_slot_name "mixins" .
meta:pv_formula_options skos:definition "The formula used to generate the set of permissible values from the code_set values" ;
skos:editorialNote "{'Q1': 'Do we need a CURIEorURIE entry?'}",
"{'Q2': 'Who defines the namespaces for the CURIE form?'}" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:PvFormulaOptions ;
meta:permissible_values meta:CODE,
meta:CURIE,
meta:FHIR_CODING,
meta:URI .
meta:schema_definition_name a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "name" ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:identifier true ;
meta:is_a meta:name ;
meta:is_usage_slot true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:ncname ;
meta:required true ;
meta:slot_uri meta:name ;
meta:usage_slot_name "name" .
meta:slot_definition_apply_to a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "apply_to" ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:is_a meta:apply_to ;
meta:is_usage_slot true ;
meta:multivalued true ;
meta:owner meta:SlotDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri meta:apply_to ;
meta:usage_slot_name "apply_to" .
meta:slot_definition_is_a a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "is_a" ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:is_a meta:is_a ;
meta:is_usage_slot true ;
meta:owner meta:SlotDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri meta:is_a ;
meta:usage_slot_name "is_a" .
meta:slot_definition_mixins a meta:SlotDefinition ;
skos:inScheme biolinkml:meta ;
meta:alias "mixins" ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:is_a meta:mixins ;
meta:is_usage_slot true ;
meta:multivalued true ;
meta:owner meta:SlotDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri meta:mixins ;
meta:usage_slot_name "mixins" .
meta:alt_description_source a meta:SlotDefinition ;
skos:definition "the source of an attributed description" ;
skos:inScheme biolinkml:meta ;
meta:alias "source" ;
meta:definition_uri meta:alt_description_source ;
meta:domain meta:AltDescription ;
meta:domain_of meta:AltDescription ;
meta:key true ;
meta:owner meta:AltDescription ;
meta:range meta:string ;
meta:required true ;
meta:slot_uri meta:source .
meta:alt_description_text a meta:SlotDefinition ;
skos:definition "text of an attributed description" ;
skos:inScheme biolinkml:meta ;
meta:alias "description" ;
meta:definition_uri meta:alt_description_text ;
meta:domain meta:AltDescription ;
meta:domain_of meta:AltDescription ;
meta:owner meta:AltDescription ;
meta:range meta:string ;
meta:required true ;
meta:slot_uri meta:description .
meta:inverse a meta:SlotDefinition ;
skos:definition "indicates that any instance of d s r implies that there is also an instance of r s' d" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation owl:inverseOf ;
meta:definition_uri meta:inverse ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:owner meta:SlotDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri owl:inverseOf .
meta:license a meta:SlotDefinition ;
OIO:inSubset meta:owl ;
skos:definition "license for the schema" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation dcterms:license ;
meta:definition_uri meta:license ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:string ;
meta:slot_uri dcterms:license .
meta:local_name_value a meta:SlotDefinition ;
skos:definition "a name assigned to an element in a given ontology" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation skos:altLabel ;
meta:definition_uri meta:local_name_value ;
meta:domain meta:LocalName ;
meta:domain_of meta:LocalName ;
meta:owner meta:LocalName ;
meta:range meta:string ;
meta:required true ;
meta:slot_uri skos:altLabel .
meta:singular_name a meta:SlotDefinition ;
skos:definition "a name that is used in the singular form" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation skos:altLabel ;
meta:definition_uri meta:singular_name ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:owner meta:SlotDefinition ;
meta:range meta:string ;
meta:slot_uri skos:altLabel .
meta:slot_definitions a meta:SlotDefinition ;
skos:definition "slot definitions" ;
skos:inScheme biolinkml:meta ;
meta:alias "slots" ;
meta:definition_uri meta:slot_definitions ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:inlined true ;
meta:multivalued true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri meta:slots .
meta:subclass_of a meta:SlotDefinition ;
skos:definition "rdfs:subClassOf to be emitted in OWL generation" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation rdfs:subClassOf ;
meta:definition_uri meta:subclass_of ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:owner meta:ClassDefinition ;
meta:range meta:uriorcurie ;
meta:slot_uri rdfs:subClassOf .
meta:subproperty_of a meta:SlotDefinition ;
skos:definition "Ontology property which this slot is a subproperty of" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation rdfs:subPropertyOf ;
meta:definition_uri meta:subproperty_of ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:owner meta:SlotDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri rdfs:subPropertyOf .
meta:title a meta:SlotDefinition ;
OIO:inSubset meta:owl ;
skos:definition "the official title of the schema" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation dcterms:title ;
meta:definition_uri meta:title ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:string ;
meta:slot_uri dcterms:title .
meta:type_uri a meta:SlotDefinition ;
skos:definition "The uri that defines the possible values for the type definition" ;
skos:inScheme biolinkml:meta ;
skos:note "every root type must have a type uri",
"uri is typically drawn from the set of URI's defined in OWL (https://www.w3.org/TR/2012/REC-owl2-syntax-20121211/#Datatype_Maps)" ;
meta:alias "uri" ;
meta:definition_uri meta:type_uri ;
meta:domain meta:TypeDefinition ;
meta:domain_of meta:TypeDefinition ;
meta:inherited true ;
meta:owner meta:TypeDefinition ;
meta:range meta:uriorcurie ;
meta:slot_uri meta:uri .
meta:value_description a meta:SlotDefinition ;
skos:definition "description of what the value is doing" ;
skos:inScheme biolinkml:meta ;
meta:alias "description" ;
meta:definition_uri meta:value_description ;
meta:domain meta:Example ;
meta:domain_of meta:Example ;
meta:owner meta:Example ;
meta:range meta:string ;
meta:slot_uri meta:description .
meta:version a meta:SlotDefinition ;
skos:definition "particular version of schema" ;
skos:inScheme biolinkml:meta ;
skos:mappingRelation pav:version,
schema:schemaVersion ;
meta:definition_uri meta:version ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:string ;
meta:slot_uri pav:version .
meta:alias a meta:SlotDefinition ;
skos:definition "the name used for a slot in the context of its owning class. If present, this is used instead of the actual slot name." ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:alias ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:owner meta:SlotDefinition ;
meta:range meta:string ;
meta:slot_uri meta:alias .
meta:attributes a meta:SlotDefinition ;
skos:definition "Inline definition of slots" ;
skos:inScheme biolinkml:meta ;
skos:note "attributes are an alternative way of defining new slots. An attribute adds a slot to the global space in the form <class_name>__<slot_name> (lower case, double underscores). Attributes can be specialized via slot_usage." ;
meta:definition_uri meta:attributes ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:inlined true ;
meta:multivalued true ;
meta:owner meta:ClassDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri meta:attributes .
meta:base a meta:SlotDefinition ;
skos:definition "python base type that implements this type definition" ;
skos:inScheme biolinkml:meta ;
skos:note "every root type must have a base",
"the base is inherited by child types but may be overriden. Base compatibility is not checked." ;
meta:definition_uri meta:base ;
meta:domain meta:TypeDefinition ;
meta:domain_of meta:TypeDefinition ;
meta:inherited true ;
meta:owner meta:TypeDefinition ;
meta:range meta:string ;
meta:slot_uri meta:base .
meta:class_uri a meta:SlotDefinition ;
skos:definition "URI of the class in an RDF environment" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:class_uri ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:ifabsent "class_curie" ;
meta:owner meta:ClassDefinition ;
meta:range meta:uriorcurie ;
meta:slot_uri meta:class_uri .
meta:classes a meta:SlotDefinition ;
skos:definition "class definitions" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:classes ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:inlined true ;
meta:multivalued true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:ClassDefinition ;
meta:slot_uri meta:classes .
meta:code_set a meta:SlotDefinition ;
skos:definition "the identifier of an enumeration code set." ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:code_set ;
meta:domain meta:EnumDefinition ;
meta:domain_of meta:EnumDefinition ;
meta:owner meta:EnumDefinition ;
meta:range meta:uriorcurie ;
meta:slot_uri meta:code_set ;
meta:todos "this should be able to connect to an existing code set from TCCM" .
meta:code_set_tag a meta:SlotDefinition ;
skos:definition "the version tag of the enumeration code set" ;
skos:inScheme biolinkml:meta ;
skos:note "enum_definition cannot have both a code_set_tag and a code_set_version" ;
meta:definition_uri meta:code_set_tag ;
meta:domain meta:EnumDefinition ;
meta:domain_of meta:EnumDefinition ;
meta:owner meta:EnumDefinition ;
meta:range meta:string ;
meta:slot_uri meta:code_set_tag .
meta:code_set_version a meta:SlotDefinition ;
skos:definition "the version identifier of the enumeration code set" ;
skos:inScheme biolinkml:meta ;
skos:note "we assume that version identifiers lexically sort in temporal order. Recommend semver when possible" ;
meta:definition_uri meta:code_set_version ;
meta:domain meta:EnumDefinition ;
meta:domain_of meta:EnumDefinition ;
meta:owner meta:EnumDefinition ;
meta:range meta:string ;
meta:slot_uri meta:code_set_version .
meta:default_curi_maps a meta:SlotDefinition ;
skos:definition "ordered list of prefixcommon biocontexts to be fetched to resolve id prefixes and inline prefix variables" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:default_curi_maps ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:multivalued true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:string ;
meta:slot_uri meta:default_curi_maps .
meta:default_prefix a meta:SlotDefinition ;
skos:definition "default and base prefix -- used for ':' identifiers, @base and @vocab" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:default_prefix ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:ifabsent "default_ns" ;
meta:owner meta:SchemaDefinition ;
meta:range meta:string ;
meta:slot_uri meta:default_prefix .
meta:default_range a meta:SlotDefinition ;
skos:definition "default slot range to be used if range element is omitted from a slot definition" ;
skos:editorialNote "restricted to type definitions for the time being. Could be broadened if required" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:default_range ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:TypeDefinition ;
meta:slot_uri meta:default_range .
meta:defining_slots a meta:SlotDefinition ;
skos:definition "The combination of is a plus defining slots form a genus-differentia definition, or the set of necessary and sufficient conditions that can be transformed into an OWL equivalence axiom" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:defining_slots ;
meta:domain meta:ClassDefinition ;
meta:domain_of meta:ClassDefinition ;
meta:inherited true ;
meta:multivalued true ;
meta:owner meta:ClassDefinition ;
meta:range meta:SlotDefinition ;
meta:slot_uri meta:defining_slots .
meta:domain a meta:SlotDefinition ;
skos:definition """defines the type of the subject of the slot. Given the following slot definition
S1:
domain: C1
range: C2
the declaration
X:
S1: Y
implicitly asserts that X is an instance of C1
""" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:domain ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:ClassDefinition ;
meta:slot_uri meta:domain .
meta:domain_of a meta:SlotDefinition ;
skos:definition "the class(es) that reference the slot in a \"slots\" or \"slot_usage\" context" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:domain_of ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:multivalued true ;
meta:owner meta:SlotDefinition ;
meta:range meta:ClassDefinition ;
meta:readonly "filled in by the loader" ;
meta:slot_uri meta:domain_of .
meta:emit_prefixes a meta:SlotDefinition ;
skos:definition "a list of Curie prefixes that are used in the representation of instances of the model. All prefixes in this list are added to the prefix sections of the target models." ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:emit_prefixes ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:multivalued true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:ncname ;
meta:slot_uri meta:emit_prefixes .
meta:enums a meta:SlotDefinition ;
skos:definition "enumerated ranges" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:enums ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:inlined true ;
meta:multivalued true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:EnumDefinition ;
meta:slot_uri meta:enums .
meta:extension_tag a meta:SlotDefinition ;
skos:definition "a tag associated with an extension" ;
skos:inScheme biolinkml:extensions ;
meta:alias "tag" ;
meta:definition_uri meta:extension_tag ;
meta:domain meta:Extension ;
meta:domain_of meta:Extension ;
meta:imported_from "biolinkml:extensions" ;
meta:owner meta:Extension ;
meta:range meta:uriorcurie ;
meta:required true ;
meta:slot_uri meta:tag .
meta:extension_value a meta:SlotDefinition ;
skos:definition "the actual annotation" ;
skos:inScheme biolinkml:extensions ;
meta:alias "value" ;
meta:definition_uri meta:extension_value ;
meta:domain meta:Extension ;
meta:domain_of meta:Extension ;
meta:imported_from "biolinkml:extensions" ;
meta:owner meta:Extension ;
meta:range meta:string ;
meta:required true ;
meta:slot_uri meta:value .
meta:generation_date a meta:SlotDefinition ;
OIO:inSubset meta:owl ;
skos:definition "date and time that the schema was loaded/generated" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:generation_date ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:datetime ;
meta:readonly "supplied by the schema loader" ;
meta:slot_uri meta:generation_date .
meta:id a meta:SlotDefinition ;
skos:definition "The official schema URI" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:id ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:uri ;
meta:required true ;
meta:slot_uri meta:id .
meta:identifier a meta:SlotDefinition ;
rdfs:seeAlso <https://en.wikipedia.org/wiki/Identifier> ;
skos:altLabel "ID",
"UID",
"code",
"primary key" ;
skos:definition "True means that the key slot(s) uniquely identify the container. There can be at most one identifier or key per container" ;
skos:inScheme biolinkml:meta ;
skos:note "a given domain can have at most one identifier",
"a key slot is automatically required. Identifiers cannot be optional",
"identifier is inherited",
"identifiers and keys are mutually exclusive. A given domain cannot have both" ;
meta:definition_uri meta:identifier ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:slot_uri meta:identifier .
meta:ifabsent a meta:SlotDefinition ;
skos:definition """function that provides a default value for the slot. Possible values for this slot are defined in biolink.utils.ifabsent_functions.default_library:
* [Tt]rue -- boolean True
* [Ff]alse -- boolean False
* int(value) -- integer value
* str(value) -- string value
* default_range -- schema default range
* bnode -- blank node identifier
* slot_uri -- URI for the slot
* class_curie -- CURIE for the containing class
* class_uri -- URI for the containing class""" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:ifabsent ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:string ;
meta:slot_uri meta:ifabsent .
meta:imports a meta:SlotDefinition ;
skos:definition "other schemas that are included in this schema" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:imports ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:multivalued true ;
meta:owner meta:SchemaDefinition ;
meta:range meta:uriorcurie ;
meta:slot_uri meta:imports .
meta:inherited a meta:SlotDefinition ;
skos:definition "true means that the *value* of a slot is inherited by subclasses" ;
skos:inScheme biolinkml:meta ;
skos:note "Inherited applies to slot values. Parent *slots* are always inherited by subclasses" ;
meta:definition_uri meta:inherited ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:slot_uri meta:inherited .
meta:inlined a meta:SlotDefinition ;
skos:definition "True means that keyed or identified slot appears in an outer structure by value. False means that only the key or identifier for the slot appears within the domain, referencing a structure that appears elsewhere." ;
skos:inScheme biolinkml:meta ;
skos:note "classes without keys or identifiers are necessarily inlined as lists" ;
meta:definition_uri meta:inlined ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:slot_uri meta:inlined .
meta:inlined_as_list a meta:SlotDefinition ;
skos:definition "True means that an inlined slot is represented as a list of range instances. False means that an inlined slot is represented as a dictionary, whose key is the slot key or identifier and whose value is the range instance." ;
skos:inScheme biolinkml:meta ;
skos:note """A keyed or identified class with one additional slot can be input in a third form, a dictionary whose key
is the key or identifier and whose value is the one additional element. This form is still stored according
to the inlined_as_list setting.""",
"""The default loader will accept either list or dictionary form as input. This parameter controls internal
representation and output.""" ;
meta:definition_uri meta:inlined_as_list ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:slot_uri meta:inlined_as_list .
meta:integer a meta:TypeDefinition ;
skos:definition "An integer" ;
skos:inScheme biolinkml:types ;
meta:base "int" ;
meta:definition_uri metatype:Integer ;
meta:imported_from "biolinkml:types" ;
meta:uri xsd:integer .
meta:is_class_field a meta:SlotDefinition ;
skos:definition "indicates that any instance, i, the domain of this slot will include an assert of i s range" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:is_class_field ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:slot_uri meta:is_class_field .
meta:is_usage_slot a meta:SlotDefinition ;
skos:definition "True means that this slot was defined in a slot_usage situation" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:is_usage_slot ;
meta:deprecated "Replaced by usage_slot_name" ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:readonly "filled in by the loader" ;
meta:slot_uri meta:is_usage_slot .
meta:key a meta:SlotDefinition ;
skos:definition "True means that the key slot(s) uniquely identify the container. In future releases, it will be possible for there to be compound keys, where several slots combine to produce a unique identifier" ;
skos:inScheme biolinkml:meta ;
skos:note "a given domain can have at most one key slot (restriction to be removed in the future)",
"a key slot is automatically required. Keys cannot be optional",
"identifiers and keys are mutually exclusive. A given domain cannot have bot",
"key is inherited" ;
meta:definition_uri meta:key ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:boolean ;
meta:slot_uri meta:key .
meta:local_name_source a meta:SlotDefinition ;
skos:definition "the ncname of the source of the name" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:local_name_source ;
meta:domain meta:LocalName ;
meta:domain_of meta:LocalName ;
meta:key true ;
meta:owner meta:LocalName ;
meta:range meta:ncname ;
meta:required true ;
meta:slot_uri meta:local_name_source .
meta:maximum_value a meta:SlotDefinition ;
skos:definition "for slots with ranges of type number, the value must be equal to or lowe than this" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:maximum_value ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:integer ;
meta:slot_uri meta:maximum_value .
meta:meaning a meta:SlotDefinition ;
skos:definition "the value meaning (in the 11179 sense) of a permissible value" ;
skos:editorialNote "we may want to change the range of this (and other) elements in the model to an entitydescription type construct" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:meaning ;
meta:domain meta:PermissibleValue ;
meta:domain_of meta:PermissibleValue ;
meta:owner meta:PermissibleValue ;
meta:range meta:uriorcurie ;
meta:slot_uri meta:meaning .
meta:metamodel_version a meta:SlotDefinition ;
OIO:inSubset meta:owl ;
skos:definition "Version of the metamodel used to load the schema" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:metamodel_version ;
meta:domain meta:SchemaDefinition ;
meta:domain_of meta:SchemaDefinition ;
meta:owner meta:SchemaDefinition ;
meta:range meta:string ;
meta:readonly "supplied by the schema loader" ;
meta:slot_uri meta:metamodel_version .
meta:minimum_value a meta:SlotDefinition ;
skos:definition "for slots with ranges of type number, the value must be equal to or higher than this" ;
skos:inScheme biolinkml:meta ;
meta:definition_uri meta:minimum_value ;
meta:domain meta:SlotDefinition ;
meta:domain_of meta:SlotDefinition ;
meta:inherited true ;
meta:owner meta:SlotDefinition ;
meta:range meta:integer ;