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test(#10): Add test that should fail
But it doesn't
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@@ -7,4 +7,8 @@ build/ | |
.devenv | ||
result | ||
target/ | ||
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# justfile testing | ||
*.fastq.gz | ||
*.fa | ||
dragmap/ |
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@@ -1,8 +1,16 @@ | ||
dragen := "./result/bin/dragen-os" | ||
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test_segfault: test_data | ||
{{dragen}} -r narfmap --RGSM null --num-threads 2 -1 SRX882903_T2.fastq.gz | ||
test_segfault: # test_data build_reference | ||
{{dragen}} -r dragmap --RGSM test --num-threads 2 -1 SRX882903_T2.fastq.gz > output.log | ||
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build_reference: test_data | ||
# mkdir dragmap | ||
{{dragen}} \ | ||
--build-hash-table true \ | ||
--ht-reference GRCh38_chr21.fa \ | ||
--output-directory dragmap \ | ||
--ht-num-threads 2 | ||
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test_data: | ||
wget https://raw.githubusercontent.com/nf-core/test-datasets/nascent/testdata/SRX882903_T2.fastq.gz | ||
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wget https://raw.githubusercontent.com/nf-core/test-datasets/nascent/reference/GRCh38_chr21.fa |