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Feature request - add option to sort by query name like Picard #369
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Hi @TimurIs. I think you can make a PR no problem. I'll take a look at it when you do. You should be able to compile it and do a quick test run. Thanks. |
Can we expect a PR? Otherwise I'll close this issue. |
Yes, I'll do it soon. Sorry for a delay |
Hello @pjotrp, I've created 2 PRs: 1 for sambamba and 1 for BioD. Check them please and let me know if I screwed something up :) |
Added. Thanks @TimurIs |
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Hi,
I think it could be a good thing to make sambamba query-name sort be compatible with other Picard tools. I wrote a quick implementation of this in BioD/bio/bam/reader.d (based on https://github.com/samtools/htsjdk/blob/master/src/main/java/htsjdk/samtools/SAMRecordQueryNameComparator.java)
But I'm very new to the field of bioinformatics and I'm using the D language for the first time, so that is why I've decided not to use the Pull-request.
I'm open for any kind of collaboration as long as I can get some guidence in D language.
Thank you,
Timur
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