From 9db983b996a7a82e84cd4064bd7010b03a2a4b7a Mon Sep 17 00:00:00 2001
From: Luca Cozzuto <lucacozzuto@gmail.com>
Date: Wed, 4 Dec 2024 10:00:40 +0100
Subject: [PATCH] Delete docs/mop_consensus.rst

---
 docs/mop_consensus.rst | 63 ------------------------------------------
 1 file changed, 63 deletions(-)
 delete mode 100644 docs/mop_consensus.rst

diff --git a/docs/mop_consensus.rst b/docs/mop_consensus.rst
deleted file mode 100644
index 8371cfc..0000000
--- a/docs/mop_consensus.rst
+++ /dev/null
@@ -1,63 +0,0 @@
-.. _home-page-mopconsensus:
-
-*******************
-MOP_CONSENSUS
-*******************
-
-.. autosummary::
-   :toctree: generated
-
-This pipeline takes as input the output from MOP_MOD with all the four worklows. It outputs the consensus of the diferent predictions running the tool `Nanoconsensus <https://github.com/ADelgadoT/NanoConsensus>`__ in parallel on each transcript for each comparison.
-
-
-Input Parameters
-======================
-
-The input parameters are stored in yaml files like the one represented here:
-
-.. literalinclude:: ../mop_consensus/params.yaml
-   :language: yaml
-
-
-How to run the pipeline
-=============================
-
-Before launching the pipeline,user should:
-
-1. Decide which containers to use - either docker or singularity **[-with-docker / -with-singularity]**.
-2. Fill in both **params.config** and **tools_opt.tsv** files.
-
-To launch the pipeline, please use the following command:
-
-.. code-block:: console
-
-   nextflow run mop_consensus.nf -params-file params.yaml  -with-singularity > log.txt
-
-
-You can run the pipeline in the background adding the nextflow parameter **-bg**:
-
-.. code-block:: console
-
-   nextflow run mop_consensus.nf -params-file params.yaml -with-singularity -bg > log.txt
-
-You can change the parameters either by changing **params.config** file or by feeding the parameters via command line:
-
-.. code-block:: console
-
-   nextflow run mop_consensus.nf -params-file params.yaml -with-singularity -bg --output test2 > log.txt
-
-
-You can specify a different working directory with temporary files:
-
-.. code-block:: console
-
-   nextflow run mop_consensus.nf -params-file params.yaml -with-singularity -bg -w /path/working_directory > log.txt
-
-
-Results
-====================
-
-Here an example of a result:
-
-.. image:: ../img/nanocons.png
-  :width: 800