From e5017b5f9222a2d704d3311c7fabde699d5c6f90 Mon Sep 17 00:00:00 2001 From: Marcel Bargull <marcel.bargull@udo.edu> Date: Mon, 15 Apr 2024 17:10:28 +0200 Subject: [PATCH] fix: Workaround conda-mambabuild needs local channel prepopulated if referenced via "-c local" for newer conda/conda-build versions (not sure why, TBH). Signed-off-by: Marcel Bargull <marcel.bargull@udo.edu> --- bioconda_utils/docker_utils.py | 11 +++++++---- 1 file changed, 7 insertions(+), 4 deletions(-) diff --git a/bioconda_utils/docker_utils.py b/bioconda_utils/docker_utils.py index a5792bc3a5..482eedb128 100644 --- a/bioconda_utils/docker_utils.py +++ b/bioconda_utils/docker_utils.py @@ -94,10 +94,13 @@ # will exist in the container but will be empty. Channels expect at least # a linux-64/linux-aarch64 and noarch directory within that directory, so we # make sure it exists before adding the channel. -mkdir -p {self.container_staging}/linux-64 -mkdir -p {self.container_staging}/linux-aarch64 -mkdir -p {self.container_staging}/noarch -conda index {self.container_staging} +# Also ensure conda-build's local channel directory exists the same way. +for local_channel in '/opt/conda/conda-bld' '{self.container_staging}'; do + mkdir -p "${{local_channel}}"/linux-64 + mkdir -p "${{local_channel}}"/linux-aarch64 + mkdir -p "${{local_channel}}"/noarch + conda index "${{local_channel}}" +done conda config --add channels file://{self.container_staging} 2> >( grep -vF "Warning: 'file://{self.container_staging}' already in 'channels' list, moving to the top" >&2 )