diff --git a/recipes/artic/meta.yaml b/recipes/artic/meta.yaml index 59642e631a4cb..6238f8b96b643 100644 --- a/recipes/artic/meta.yaml +++ b/recipes/artic/meta.yaml @@ -1,6 +1,6 @@ {% set name = "artic" %} -{% set version = "1.2.4" %} -{% set sha256 = "981219a49cec01dc82a9375b16f844278e797ad4034efa1eaa410ccb1849c617" %} +{% set version = "1.5.1" %} +{% set sha256 = "6bbd5f07f1417ff046bdc17c57cf55871027738e082121e24c5b22593351d27b" %} package: name: {{ name|lower }} @@ -10,7 +10,7 @@ source: sha256: {{ sha256 }} build: - number: 1 + number: 0 noarch: python run_exports: - {{ pin_subpackage('artic', max_pin='x.x') }} @@ -18,62 +18,53 @@ build: entry_points: - artic=artic.pipeline:main - align_trim=artic.align_trim:main - - align_trim_n=artic.align_trim_n:main - margin_cons=artic.margin_cons:main - - margin_cons_medaka=artic.margin_cons_medaka:main - vcfextract=artic.vcfextract:main - artic_vcf_merge=artic.vcf_merge:main - artic_vcf_filter=artic.vcf_filter:main - artic_make_depth_mask=artic.make_depth_mask:main - artic_fasta_header=artic.fasta_header:main - artic_mask=artic.mask:main - - artic_get_stats=artic.artic_mqc:main + - artic_get_models=artic.get_models:main requirements: host: - - python >=3 + - python ==3.9 - pip + - setuptools run: - - python - - artic-porechop >=0.3.2pre - - artic-tools - - longshot + - python ==3.9 - bcftools - biopython - bwa + - clair3 - clint - htslib - - medaka >=1.10.0 - - minimap2 >=2.26 + - minimap2 - multiqc - - muscle =3.8 - - nanopolish >=0.14.0 + - muscle <5.1 - pandas - pip - pysam - pytest - - pyvcf + - cyvcf2 - pyfaidx =0.6.0 # DO NOT CHANGE THIS PIN UNDER ANY CIRCUMSTANCES, IT WILL BREAK THE PIPELINE - requests - samtools - tqdm - - keras-preprocessing >=1.1.2 - test: commands: - artic -h - align_trim -h - - align_trim_n -h - margin_cons -h - - margin_cons_medaka -h - vcfextract -h - artic_vcf_merge -h - artic_vcf_filter -h - artic_make_depth_mask -h - artic_fasta_header -h - artic_mask -h - - artic_get_stats -h + - artic_get_models -h about: home: https://github.com/artic-network/fieldbioinformatics