From f11766fca75a3dea187e47accf8824bbe3e4de0f Mon Sep 17 00:00:00 2001
From: Nicola Soranzo <nicola.soranzo@earlham.ac.uk>
Date: Fri, 1 Nov 2024 18:37:29 +0000
Subject: [PATCH] Fix usearch path in lOTUs.cfg

---
 recipes/lotus2/build.sh  | 4 ++--
 recipes/lotus2/meta.yaml | 2 +-
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/recipes/lotus2/build.sh b/recipes/lotus2/build.sh
index 5b4edbec842fd..79c1bbc3500d4 100644
--- a/recipes/lotus2/build.sh
+++ b/recipes/lotus2/build.sh
@@ -1,10 +1,10 @@
 #!/bin/sh
 SHARE_DIR=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM
 
-rm -rf bin/installs/ bin/LCA bin/rtk bin/sdm bin/vsearch configs/sdm_src/
+rm -rf bin/installs/ bin/lambda3* bin/LCA bin/rtk bin/sdm bin/vsearch
 # Configure LotuS2
 cp configs/LotuS.cfg.def lOTUs.cfg
-for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm vsearch; do
+for binary in blastn clustalo lambda3 LCA mafft minimap2 rtk sdm swarm usearch vsearch; do
     sed -i.bak -e "s|^$binary[[:space:]].*|$binary $PREFIX/bin/$binary|" lOTUs.cfg
 done
 for binary in cd-hit fasttree hmmsearch iqtree itsx makeBlastDB RDPjar; do
diff --git a/recipes/lotus2/meta.yaml b/recipes/lotus2/meta.yaml
index bc46dd5be022e..2da7f320f44bf 100644
--- a/recipes/lotus2/meta.yaml
+++ b/recipes/lotus2/meta.yaml
@@ -11,7 +11,7 @@ source:
   sha256: {{ sha256 }}
 
 build:
-  number: 0
+  number: 1
   noarch: generic
   run_exports:
     - {{ pin_subpackage(name, max_pin='x') }}