From 55a62634dc95cf6e9610de420d45cf981d4bc2ee Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Sun, 20 Oct 2024 16:05:57 +0000
Subject: [PATCH 1/6] Update fastq-dl to 3.0.0

---
 recipes/fastq-dl/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index 0f276e73c516e..eda2101d1f5e0 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "2.0.4" %}
+{% set version = "3.0.0" %}
 
 package:
   name: fastq-dl
@@ -6,7 +6,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/f/fastq_dl/fastq_dl-{{ version }}.tar.gz
-  sha256: 201a75f7e7b08d1eb56c625c98f92ad39e9e683e1921bb60a24a38a158a2daa8
+  sha256: de85e3fcc60c2f2fb9313336df9706add440b0f89963f28a46fa75e5ff041a0a
 
 build:
   number: 0

From 6fff7f0a0f88e9b91e00fcffabd549023fe9f70c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ant=C3=B4nio=20Camargo?=
 <apcamargo@users.noreply.github.com>
Date: Sun, 20 Oct 2024 12:06:34 -0700
Subject: [PATCH 2/6] Update `fastq-dl` recipe

---
 recipes/fastq-dl/meta.yaml | 27 ++++++++++++++-------------
 1 file changed, 14 insertions(+), 13 deletions(-)

diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index eda2101d1f5e0..0b4d47c6a99a4 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -11,25 +11,26 @@ source:
 build:
   number: 0
   noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
   entry_points:
-    - fastq-dl = fastq_dl.fastq_dl:main
-  script: "{{ PYTHON }} -m pip install . -vv"
+    - fastq-dl = fastq_dl.cli.download:main
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x.x") }}
 
 requirements:
   host:
-    - python >=3.7
-    - poetry =1.3
+    - python >=3.9,<4.0
+    - poetry-core
     - pip
-
   run:
-    - executor
-    - pigz
-    - python >=3.7
-    - pysradb >=1.4
-    - requests
-    - rich-click >=1.6.0
-    - sra-tools >=3.0.1
-    - wget
+    - python >=3.9.0,<4.0.0
+    - requests >=2.31.0,<3.0.0
+    - pysradb >=1.4.0,<2.0.0
+    - rich-click >=1.6.1,<2.0.0
+    - executor >=23.2.0,<24.0.0
+    - rich >=13.3.1,<14.0.0
+    - markdown-it-py 2.2.0
+    - pandas >=2.2.3,<3.0.0
 
 test:
   commands:

From 446247c2aeacce321e12393c7fd53a015a2fe804 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Ant=C3=B4nio=20Camargo?=
 <apcamargo@users.noreply.github.com>
Date: Sun, 20 Oct 2024 12:08:51 -0700
Subject: [PATCH 3/6] Add non-Python dependencies

---
 recipes/fastq-dl/meta.yaml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index 0b4d47c6a99a4..9cd27b64b58a9 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -31,6 +31,8 @@ requirements:
     - rich >=13.3.1,<14.0.0
     - markdown-it-py 2.2.0
     - pandas >=2.2.3,<3.0.0
+    - pigz
+    - wget
 
 test:
   commands:

From 7336b637a05ac6749061d4fe65c4ace0738994c9 Mon Sep 17 00:00:00 2001
From: "Robert A. Petit III" <robbie.petit@gmail.com>
Date: Sun, 20 Oct 2024 13:28:03 -0600
Subject: [PATCH 4/6] update depends, exclude depends of depends

---
 recipes/fastq-dl/meta.yaml | 16 +++++++---------
 1 file changed, 7 insertions(+), 9 deletions(-)

diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index 9cd27b64b58a9..08710bfa741e7 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -19,19 +19,17 @@ build:
 
 requirements:
   host:
-    - python >=3.9,<4.0
+    - python >=3.9
     - poetry-core
     - pip
   run:
-    - python >=3.9.0,<4.0.0
-    - requests >=2.31.0,<3.0.0
-    - pysradb >=1.4.0,<2.0.0
-    - rich-click >=1.6.1,<2.0.0
-    - executor >=23.2.0,<24.0.0
-    - rich >=13.3.1,<14.0.0
-    - markdown-it-py 2.2.0
-    - pandas >=2.2.3,<3.0.0
+    - executor
     - pigz
+    - python >=3.9
+    - pysradb >=1.4
+    - requests
+    - rich-click >=1.6.0
+    - sra-tools >=3.0.1
     - wget
 
 test:

From 5576d3c96334f158cb923970d64a3d9cf97939aa Mon Sep 17 00:00:00 2001
From: "Robert A. Petit III" <robbie.petit@gmail.com>
Date: Sun, 20 Oct 2024 13:29:36 -0600
Subject: [PATCH 5/6] add to maintainers

---
 recipes/fastq-dl/meta.yaml | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index 08710bfa741e7..9d42ce3d04de6 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -44,3 +44,7 @@ about:
   license: MIT
   license_file: LICENSE
   summary: A tool to download FASTQs associated with Study, Experiment, or Run accessions.
+
+extra:
+  recipe-maintainers:
+    - rpetit3

From 934176afc78ce89bdcc8c55a95b09ad519eb98a9 Mon Sep 17 00:00:00 2001
From: "Robert A. Petit III" <robbie.petit@gmail.com>
Date: Sun, 20 Oct 2024 18:19:34 -0600
Subject: [PATCH 6/6] Update meta.yaml

---
 recipes/fastq-dl/meta.yaml | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/recipes/fastq-dl/meta.yaml b/recipes/fastq-dl/meta.yaml
index 9d42ce3d04de6..892a52d2045f2 100644
--- a/recipes/fastq-dl/meta.yaml
+++ b/recipes/fastq-dl/meta.yaml
@@ -1,7 +1,8 @@
+{% set name = "fastq-dl" %}
 {% set version = "3.0.0" %}
 
 package:
-  name: fastq-dl
+  name: {{ name }}
   version: {{ version }}
 
 source: