diff --git a/recipes/el_gato/build.sh b/recipes/el_gato/build.sh deleted file mode 100644 index 73991f59b0666..0000000000000 --- a/recipes/el_gato/build.sh +++ /dev/null @@ -1,6 +0,0 @@ -#!/bin/bash - -$PYTHON -m pip install . -vv - -mkdir -p $PREFIX/bin/db -cp el_gato/db/* $PREFIX/bin/db/ diff --git a/recipes/el_gato/meta.yaml b/recipes/el_gato/meta.yaml index 0c15f3b4c1530..0e7fe03025f68 100644 --- a/recipes/el_gato/meta.yaml +++ b/recipes/el_gato/meta.yaml @@ -1,10 +1,10 @@ {% set name = "el_gato" %} -{% set version = "1.19.0" %} -{% set hash = "ad390572ce785707b67a00f25978c4032981ac7e6149ddc423443e9189b30e75" %} +{% set version = "1.20.1" %} +{% set hash = "3c19594caa7aff4d1fee7a844f645c640b08adbb9fc9926439ab2c2891c88de9" %} {% set user = "appliedbinf" %} package: - name: el_gato + name: {{ name }} version: {{ version }} source: @@ -14,14 +14,19 @@ source: build: number: 0 noarch: generic + script: + - mkdir -p $PREFIX/bin/db + - cp -rf el_gato/db/* $PREFIX/bin/db/ + - {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir run_exports: - - {{ pin_subpackage(name, max_pin='x.x') }} + - {{ pin_subpackage(name, max_pin='x') }} requirements: + build: + - python host: - python >=3.8,<3.12 - pip - - setuptools run: - python >=3.8,<3.12 - minimap2 >=2.24 @@ -31,13 +36,22 @@ requirements: - nextflow - fpdf2 - packaging + - colorama # [linux] + - importlib-metadata # [py <= 38] + +extra: + skip-lints: + - should_be_noarch_python # database files aren't found properly when built with noarch: python test: commands: - el_gato.py --version about: - home: https://github.com/{{ user }}/{{ name }} + home: "https://github.com/{{ user }}/{{ name }}" license: MIT + license_family: MIT license_file: LICENSE - summary: Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies + summary: "Perform Legionella pneumophila Sequence Based Typing (SBT) from short reads or assemblies." + dev_url: "https://github.com/{{ user }}/{{ name }}" + doc_url: "https://github.com/appliedbinf/el_gato/blob/{{ version }}/README.md"