diff --git a/recipes/genotyphi/build.sh b/recipes/genotyphi/build.sh index 3d0a5d709d8f4..e0c809d30f2da 100644 --- a/recipes/genotyphi/build.sh +++ b/recipes/genotyphi/build.sh @@ -1,7 +1,7 @@ #!/bin/bash mkdir -p $PREFIX/bin -cp genotyphi.py $PREFIX/bin/genotyphi.py +cp mappingbased/genotyphi.py $PREFIX/bin/genotyphi.py ln $PREFIX/bin/genotyphi.py $PREFIX/bin/genotyphi chmod +x $PREFIX/bin/genotyphi.py $PREFIX/bin/genotyphi diff --git a/recipes/genotyphi/meta.yaml b/recipes/genotyphi/meta.yaml index 010e90af15eb0..0963798dfb8ae 100644 --- a/recipes/genotyphi/meta.yaml +++ b/recipes/genotyphi/meta.yaml @@ -1,6 +1,6 @@ {% set name="genotyphi" %} -{% set version = "2.0" %} -{% set sha256 = "ad1144fd94de00a3ece6abff08ae0d457760292747b87ddf3b64b2e5c83314ce" %} +{% set version = "2.1" %} +{% set sha256 = "bbb44b440b5fcfd792f633d7428e077a25b15a390d96af99748b178c8fa8c5b0" %} package: name: {{ name }} @@ -12,7 +12,7 @@ source: build: noarch: python - number: 1 + number: 0 run_exports: - {{ pin_subpackage(name|lower, max_pin='x') }} @@ -20,7 +20,7 @@ requirements: host: - wget run: - - python <3 + - python - samtools >=1.1 - bcftools >=1.1 - pandas @@ -33,6 +33,8 @@ test: about: home: https://github.com/typhoidgenomics/genotyphi - license: GPL3 + license: GPL-3.0-or-later + license_family: GPL3 license_file: LICENSE summary: Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome) + dev_url: https://github.com/typhoidgenomics/genotyphi