From d4629fed3a00f9848f6b6f669b21d6a1306c4749 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Wed, 26 Jun 2024 21:16:31 +0000
Subject: [PATCH 1/9] Update kmer-db to 2.0.2

---
 recipes/kmer-db/meta.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index f8fca76dc2efc..0359f748b142a 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,5 +1,5 @@
-{% set version = "1.11.1" %}
-{% set sha256 = "63886057a752a890f492bf4ca7ec97435eceebb4ac5ecb5664c69ae2736eaa80" %}
+{% set version = "2.0.2" %}
+{% set sha256 = "b4524a5e34a38969203a7295b8d65b09c5b208622da905dd9fe5885086195192" %}
 
 
 package:
@@ -7,7 +7,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 2
+  number: 0
 
 source:
   url: https://github.com/refresh-bio/kmer-db/archive/v{{ version }}.tar.gz

From 5e370221e3243a28add06ee5b53a999ed5b4b2ec Mon Sep 17 00:00:00 2001
From: mencian <joshua.zhuang@yahoo.com>
Date: Wed, 26 Jun 2024 16:35:33 -0500
Subject: [PATCH 2/9] add run_exports

---
 recipes/kmer-db/build.sh  | 11 +++++------
 recipes/kmer-db/meta.yaml | 28 ++++++++++++++--------------
 2 files changed, 19 insertions(+), 20 deletions(-)

diff --git a/recipes/kmer-db/build.sh b/recipes/kmer-db/build.sh
index 6a8bc644b0283..3ee7c78eed971 100644
--- a/recipes/kmer-db/build.sh
+++ b/recipes/kmer-db/build.sh
@@ -1,9 +1,8 @@
-#!/bin/bash
+#!/bin/bash -euo
 
+export CFLAGS="$CFLAGS -O3 -I${PREFIX}/include"
+export LDFLAGS="$LDFLAGS -L${PREFIX}/lib"
 
-CFLAGS="$CFLAGS -I${PREFIX}/include"
-LDFLAGS="$LDFLAGS -L${PREFIX}/lib"
-
-make CC="${CXX}" 
+make CC="${CXX}" -j "${CPU_COUNT}"
 install -d "${PREFIX}/bin"
-install  kmer-db "${PREFIX}/bin"
+install kmer-db "${PREFIX}/bin"
diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index 0359f748b142a..346ce581e10f8 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,35 +1,35 @@
+{% set name = "kmer-db" %}
 {% set version = "2.0.2" %}
 {% set sha256 = "b4524a5e34a38969203a7295b8d65b09c5b208622da905dd9fe5885086195192" %}
 
-
 package:
-  name: kmer-db
+  name: {{ name }}
   version: {{ version }}
 
-build:
-  number: 0
-
 source:
   url: https://github.com/refresh-bio/kmer-db/archive/v{{ version }}.tar.gz
   sha256: {{ sha256 }}
 
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage('kmer-db', max_pin="x") }}
+
 requirements:
   build:
     - make
     - {{ compiler('cxx') }}
-    - make 
   host:
     - zlib
-  run:
-    - zlib
+
+test:
+  commands:
+    - "kmer-db > /dev/null"
 
 about:
   home: https://github.com/refresh-bio/kmer-db
   summary: "Kmer-db is a fast and memory-efficient tool for estimating evolutionary distances."
-  license: GPL-3
-  license_family: GPL
+  license: "GPL-3.0-or-later"
+  license_family: GPL3
   license_file: LICENSE
-
-test:
-  commands:
-    - kmer-db > /dev/null
+  dev_url: https://github.com/refresh-bio/kmer-db

From 1a82877963dd84c70c8d95cae5da5a33dcaa14d9 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Fri, 28 Jun 2024 20:12:25 +0000
Subject: [PATCH 3/9] Update kmer-db to 2.0.3

---
 recipes/kmer-db/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index 346ce581e10f8..cb8bcf8d18c1c 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
-{% set version = "2.0.2" %}
-{% set sha256 = "b4524a5e34a38969203a7295b8d65b09c5b208622da905dd9fe5885086195192" %}
+{% set version = "2.0.3" %}
+{% set sha256 = "fb4011632c7c70b64b95d374b98c77e53e39cabf958372487d5c82f2d23b6386" %}
 
 package:
   name: {{ name }}

From d0284d6a3c79971a9bfc8b848e942d66916ab507 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Tue, 20 Aug 2024 13:15:52 +0000
Subject: [PATCH 4/9] Update kmer-db to 2.0.4

---
 recipes/kmer-db/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index cb8bcf8d18c1c..304b247e078ae 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
-{% set version = "2.0.3" %}
-{% set sha256 = "fb4011632c7c70b64b95d374b98c77e53e39cabf958372487d5c82f2d23b6386" %}
+{% set version = "2.0.4" %}
+{% set sha256 = "1989fa2afd9928976f7821d0fd7377eac963cf665ae44929d5aa1d3a0bb61d8e" %}
 
 package:
   name: {{ name }}

From e5c33f05e1e7080235d7cbe02bbc0d91df39a58f Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 29 Aug 2024 21:05:54 +0000
Subject: [PATCH 5/9] Update kmer-db to 2.0.4

---
 recipes/kmer-db/meta.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index 304b247e078ae..a0ce1eb141aa9 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
 {% set version = "2.0.4" %}
-{% set sha256 = "1989fa2afd9928976f7821d0fd7377eac963cf665ae44929d5aa1d3a0bb61d8e" %}
+{% set sha256 = "489f3ef13beea188709dafc27f43a96555ea7d2949259bfedd90f86c147bc679" %}
 
 package:
   name: {{ name }}

From dd293ffec17759371523847bf091c34b4607eef8 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 12 Sep 2024 23:10:22 +0000
Subject: [PATCH 6/9] Update kmer-db to 2.0.5

---
 recipes/kmer-db/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index a0ce1eb141aa9..6f32bbbe47fef 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
-{% set version = "2.0.4" %}
-{% set sha256 = "489f3ef13beea188709dafc27f43a96555ea7d2949259bfedd90f86c147bc679" %}
+{% set version = "2.0.5" %}
+{% set sha256 = "25594d31ba46f7016fb0e8c1788c388440c6796506d03d71e705db8680e41fcb" %}
 
 package:
   name: {{ name }}

From aba8e393a8613ccfa43ff61af9a18556ed1c5195 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 3 Oct 2024 09:19:15 +0000
Subject: [PATCH 7/9] Update kmer-db to 2.2.0

---
 recipes/kmer-db/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index 6f32bbbe47fef..783d997f8e310 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
-{% set version = "2.0.5" %}
-{% set sha256 = "25594d31ba46f7016fb0e8c1788c388440c6796506d03d71e705db8680e41fcb" %}
+{% set version = "2.2.0" %}
+{% set sha256 = "8350c3995594a8ebf4ff749be9d5ef4dbd2daf57c46122bf11495135bf0b4558" %}
 
 package:
   name: {{ name }}

From 82e5a6961f2b4869762bad7263b6bad7cc602b28 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 3 Oct 2024 22:05:36 +0000
Subject: [PATCH 8/9] Update kmer-db to 2.2.1

---
 recipes/kmer-db/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index 783d997f8e310..1ae52f06d8645 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
-{% set version = "2.2.0" %}
-{% set sha256 = "8350c3995594a8ebf4ff749be9d5ef4dbd2daf57c46122bf11495135bf0b4558" %}
+{% set version = "2.2.1" %}
+{% set sha256 = "a6bf6364ef9afd96ca77f55b7ead73ad6b86510d3dd4bf3ab2864f15a437b857" %}
 
 package:
   name: {{ name }}

From 5ad5fff5e343ace8f9b3403b034e8cd7cf341f8e Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Fri, 4 Oct 2024 11:11:04 +0000
Subject: [PATCH 9/9] Update kmer-db to 2.2.2

---
 recipes/kmer-db/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml
index 1ae52f06d8645..99f6f5a3ff21f 100644
--- a/recipes/kmer-db/meta.yaml
+++ b/recipes/kmer-db/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "kmer-db" %}
-{% set version = "2.2.1" %}
-{% set sha256 = "a6bf6364ef9afd96ca77f55b7ead73ad6b86510d3dd4bf3ab2864f15a437b857" %}
+{% set version = "2.2.2" %}
+{% set sha256 = "43264c2e132e543e32c9af3b115389a31e1c0c418428be26b7606100ae86e23d" %}
 
 package:
   name: {{ name }}