From 417543a770dea20758440e165694f4043089bb05 Mon Sep 17 00:00:00 2001 From: Joachim Wolff Date: Thu, 31 Jan 2019 13:37:09 +0100 Subject: [PATCH 1/5] Add dependency, add test cases, increase build number to 1 --- recipes/hicexplorer/meta.yaml | 20 +++++++++++++++++++- 1 file changed, 19 insertions(+), 1 deletion(-) diff --git a/recipes/hicexplorer/meta.yaml b/recipes/hicexplorer/meta.yaml index 80b289e8da5ef..95a83d0d74889 100644 --- a/recipes/hicexplorer/meta.yaml +++ b/recipes/hicexplorer/meta.yaml @@ -7,7 +7,7 @@ source: sha256: 552070da33caf48d137b3f0a43e4bb416bf943340fe4813be883ef852beb89fd build: - number: 0 + number: 1 skip: True #[py35] requirements: @@ -50,13 +50,31 @@ requirements: - unidecode - hicmatrix - pygenometracks + - hic2cool test: imports: - hicexplorer commands: + - findRestSite --version + - hicAggregateContacts --version - hicBuildMatrix --version + - hicCorrectMatrix --version - hicCorrelate --version + - hicFindEnrichedContacts --version + - hicFindTADs --version + - hicMergeMatrixBins --version + - hicPlotMatrix --version + - hicPlotDistVsCounts --version + - hicPlotTADs --version + - hicSumMatrices --version + - hicInfo --version + - hicConvertFormat --version + - hicAdjustMatrix --version + - hicNormalize --version + - hicAverageRegions --version + - hicPlotAverageRegions --version + about: home: https://github.com/deeptools/HiCExplorer From c0744f45189ce5d01fa17550d0252f7a603a125a Mon Sep 17 00:00:00 2001 From: Bjoern Gruening Date: Tue, 5 Feb 2019 21:19:37 +0100 Subject: [PATCH 2/5] rebuild some dependencies --- recipes/cooler/meta.yaml | 3 +-- recipes/hicexplorer/meta.yaml | 2 -- recipes/pairix/meta.yaml | 4 +--- recipes/pygenometracks/meta.yaml | 2 +- 4 files changed, 3 insertions(+), 8 deletions(-) diff --git a/recipes/cooler/meta.yaml b/recipes/cooler/meta.yaml index 33953f7c17fc6..839a2eb410106 100644 --- a/recipes/cooler/meta.yaml +++ b/recipes/cooler/meta.yaml @@ -9,7 +9,7 @@ source: sha256: 53d2a98c581230be88e32da4938218104a39b6a6f5f7a04956ff9d7a21180332 build: - number: 0 + number: 1 entry_points: - cooler = cooler.cli:cli @@ -18,7 +18,6 @@ requirements: - python - setuptools - zlib - run: - zlib - hdf5 diff --git a/recipes/hicexplorer/meta.yaml b/recipes/hicexplorer/meta.yaml index 95a83d0d74889..43436d99eda81 100644 --- a/recipes/hicexplorer/meta.yaml +++ b/recipes/hicexplorer/meta.yaml @@ -8,7 +8,6 @@ source: build: number: 1 - skip: True #[py35] requirements: host: @@ -74,7 +73,6 @@ test: - hicNormalize --version - hicAverageRegions --version - hicPlotAverageRegions --version - about: home: https://github.com/deeptools/HiCExplorer diff --git a/recipes/pairix/meta.yaml b/recipes/pairix/meta.yaml index a58c95a430cba..733be4d1a50da 100644 --- a/recipes/pairix/meta.yaml +++ b/recipes/pairix/meta.yaml @@ -9,7 +9,7 @@ source: md5: 72a9208377443c7abd4ea3c2418be890 build: - number: 2 + number: 4 requirements: build: @@ -18,11 +18,9 @@ requirements: - python - setuptools - zlib - run: - htslib - python - - zlib test: imports: diff --git a/recipes/pygenometracks/meta.yaml b/recipes/pygenometracks/meta.yaml index 60375f33e3a46..ca1a1412da6a9 100644 --- a/recipes/pygenometracks/meta.yaml +++ b/recipes/pygenometracks/meta.yaml @@ -7,7 +7,7 @@ source: sha256: ee998574c74d5176039eea35da8ab7f71d05c61e7a75421905d59a3336d301d7 build: - number: 1 + number: 2 script: $PYTHON setup.py install --single-version-externally-managed --record=record.txt skip: True # [py35] From 3dd3f414a7b9af1a402596f56c7cd2a7d5754feb Mon Sep 17 00:00:00 2001 From: Bjoern Gruening Date: Tue, 5 Feb 2019 22:14:45 +0100 Subject: [PATCH 3/5] reset --- recipes/pygenometracks/meta.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/recipes/pygenometracks/meta.yaml b/recipes/pygenometracks/meta.yaml index ca1a1412da6a9..60375f33e3a46 100644 --- a/recipes/pygenometracks/meta.yaml +++ b/recipes/pygenometracks/meta.yaml @@ -7,7 +7,7 @@ source: sha256: ee998574c74d5176039eea35da8ab7f71d05c61e7a75421905d59a3336d301d7 build: - number: 2 + number: 1 script: $PYTHON setup.py install --single-version-externally-managed --record=record.txt skip: True # [py35] From bacd81f305202d55b5a37554a74db424b2471661 Mon Sep 17 00:00:00 2001 From: Bjoern Gruening Date: Tue, 5 Feb 2019 22:15:08 +0100 Subject: [PATCH 4/5] bump --- recipes/cooler/meta.yaml | 1 - recipes/hicmatrix/meta.yaml | 4 ++-- 2 files changed, 2 insertions(+), 3 deletions(-) diff --git a/recipes/cooler/meta.yaml b/recipes/cooler/meta.yaml index 839a2eb410106..fe69521ca963a 100644 --- a/recipes/cooler/meta.yaml +++ b/recipes/cooler/meta.yaml @@ -19,7 +19,6 @@ requirements: - setuptools - zlib run: - - zlib - hdf5 - python - six diff --git a/recipes/hicmatrix/meta.yaml b/recipes/hicmatrix/meta.yaml index 2209c5a61034e..ad913ce15f478 100644 --- a/recipes/hicmatrix/meta.yaml +++ b/recipes/hicmatrix/meta.yaml @@ -1,13 +1,13 @@ package: name: hicmatrix - version: '6' + version: 6 source: url: https://github.com/deeptools/HiCMatrix/archive/6.tar.gz sha256: 19b052a8d3165d253eaf32d8a525fb565f5beacd269e6d3746f5504f4353d6e2 build: - number: 0 + number: 1 noarch: python requirements: From a9885aa41919fd570f73aacd4ac3034bcf366e46 Mon Sep 17 00:00:00 2001 From: Bjoern Gruening Date: Wed, 6 Feb 2019 02:26:00 +0100 Subject: [PATCH 5/5] bl hicexplorer for the moment --- build-fail-blacklist | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/build-fail-blacklist b/build-fail-blacklist index 1a81f4b636b21..8d8140bef3409 100644 --- a/build-fail-blacklist +++ b/build-fail-blacklist @@ -971,3 +971,7 @@ recipes/bioconductor-adacgh2 recipes/bioconductor-snapcgh recipes/bioconductor-italics recipes/bioconductor-biggr + + + +recipes/hicexplorer