From a35a1b774cbb146728f02803478e203e541baefa Mon Sep 17 00:00:00 2001
From: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
Date: Wed, 30 Jan 2019 18:04:37 +0100
Subject: [PATCH] nextflow 19.01.0 build 4

This commit changes the build script so that
it modifies the NXF_DIST directory to the package
path provided by Conda

See https://github.com/nextflow-io/nextflow/issues/954

Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
---
 recipes/nextflow/build.sh  | 15 ++-------------
 recipes/nextflow/meta.yaml |  2 +-
 2 files changed, 3 insertions(+), 14 deletions(-)

diff --git a/recipes/nextflow/build.sh b/recipes/nextflow/build.sh
index 02599c45b28d0..b62e2cac7c694 100644
--- a/recipes/nextflow/build.sh
+++ b/recipes/nextflow/build.sh
@@ -1,17 +1,6 @@
 mkdir -p $PREFIX/bin
-sed "s|^NXF_HOME=.*|NXF_HOME=$PREFIX/share/$PKG_NAME|" nextflow > $PREFIX/bin/nextflow
-
-# Use $HOME for storing some temp files (friendlier for multiuser environments)
-sed -i.bak "s|^  NXF_ASSETS=\${NXF_ASSETS:-\${NXF_HOME:-\$HOME/.nextflow}/assets}| NXF_ASSETS=\${NXF_ASSETS:=\"\$HOME/.nextflow/assets\"}|" $PREFIX/bin/nextflow
-rm -f *.bak
-
-sed -i.bak "s|NXF_LAUNCHER=\${NXF_HOME}/tmp/launcher/nextflow-\${NXF_PACK}_\${NXF_VER}/\${NXF_HOST}|NXF_LAUNCHER=\$HOME/.nextflow/tmp/launcher/nextflow-\${NXF_PACK}_\${NXF_VER}/\${NXF_HOST}|" $PREFIX/bin/nextflow
-rm -f *.bak
-
-sed -i.bak "s|^CAPSULE_CACHE_DIR=\${CAPSULE_CACHE_DIR:=\"\$NXF_HOME/capsule\"}|CAPSULE_CACHE_DIR=\${CAPSULE_CACHE_DIR:=\"\$HOME/.nextflow/capsule\"}|" $PREFIX/bin/nextflow
-rm -f *.bak
-
-sed -i.bak "s|^JAVA_KEY=\"\$NXF_HOME/|JAVA_KEY=\"\$HOME/.nextflow/|" $PREFIX/bin/nextflow
+sed "s|^NXF_DIST=.*|NXF_DIST=$PREFIX/share/$PKG_NAME/dist|" nextflow > $PREFIX/bin/nextflow
+sed -i.bak "s|^CAPSULE_CACHE_DIR=.*|CAPSULE_CACHE_DIR=\${CAPSULE_CACHE_DIR:=$PREFIX/share/$PKG_NAME/capsule}|" $PREFIX/bin/nextflow
 rm -f *.bak
 
 chmod 755 $PREFIX/bin/nextflow
diff --git a/recipes/nextflow/meta.yaml b/recipes/nextflow/meta.yaml
index 93b1521d41786..35d292891b74e 100644
--- a/recipes/nextflow/meta.yaml
+++ b/recipes/nextflow/meta.yaml
@@ -5,7 +5,7 @@ package:
   version: {{ version }}
 
 build:
-  number: 3
+  number: 4
   noarch: generic
 
 source: