diff --git a/recipes/abyss/meta.yaml b/recipes/abyss/meta.yaml
index 0d927ebfebd75..813b1133e843f 100644
--- a/recipes/abyss/meta.yaml
+++ b/recipes/abyss/meta.yaml
@@ -1,18 +1,18 @@
 {% set name = "abyss" %}
-{% set version = "2.3.8" %}
+{% set version = "2.3.9" %}
  
 package:
   name: {{ name|lower }}
   version: {{ version }}
 
 build:
-  number: 1
+  number: 0
   run_exports:
     - {{ pin_subpackage(name, max_pin="x") }}
 
 source:
   url: https://github.com/bcgsc/abyss/releases/download/{{ version }}/abyss-{{ version }}.tar.gz
-  sha256: 3c262269043f619c79ec3dcd91f5595cb141229f9a13d1a76a952b9a0bfb0d84
+  sha256: 55f0b27b67b4486dc6cbe132c0f4c228ee4f9e86c56292a7b50633df87e3212e
   patches:
     - config.patch
 
diff --git a/recipes/callingcardstools/meta.yaml b/recipes/callingcardstools/meta.yaml
index d61de452bbed0..658e9faaff4dd 100644
--- a/recipes/callingcardstools/meta.yaml
+++ b/recipes/callingcardstools/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "callingcardstools" %}
-{% set version = "1.7.2" %}
+{% set version = "1.8.0" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 6e7ab8ca8ec454c916a67655940e5602300f2b2d0cefaa98462d8ef728a179cd
+  sha256: 4be2d211751482c7d8618be6974a69ec711c9d9f55e0739e277bd41c6194cb05
 
 build:
   noarch: python
diff --git a/recipes/f5c/build.sh b/recipes/f5c/build.sh
index 89e1f0240816d..838e83b3b3e28 100644
--- a/recipes/f5c/build.sh
+++ b/recipes/f5c/build.sh
@@ -1,11 +1,14 @@
 #!/bin/bash
+
+set -xe
+
 scripts/install-hts.sh
 scripts/install-zstd.sh
 ./configure  --enable-localzstd
 cd slow5lib
-make CC=$CC CXX=$CXX
+make -j ${CPU_COUNT} CC=$CC CXX=$CXX
 cd ..
 export CFLAGS="${CFLAGS} -D__STDC_FORMAT_MACROS"
-make  CC=$CC CXX=$CXX
+make -j ${CPU_COUNT} CC=$CC CXX=$CXX
 mkdir -p $PREFIX/bin
 cp f5c $PREFIX/bin/f5c
diff --git a/recipes/f5c/meta.yaml b/recipes/f5c/meta.yaml
index 2a8ff3789ee82..307b7c047ae47 100644
--- a/recipes/f5c/meta.yaml
+++ b/recipes/f5c/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: 3354813a0523ae3fead68cc3ec5859fa745576b5dc88758a9de172184fac20ab
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('f5c', max_pin="x") }}
 
@@ -37,3 +37,8 @@ about:
   license: MIT
   license_file: LICENSE
   summary: 'An optimised re-implementation of the call-methylation and eventalign modules in Nanopolish.'
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64
diff --git a/recipes/fastlin/meta.yaml b/recipes/fastlin/meta.yaml
index 7932d1fadd683..611c110f0b89a 100644
--- a/recipes/fastlin/meta.yaml
+++ b/recipes/fastlin/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: 3d73f83465bef74003e2d8a853a2902a33e289d1acbe1d6a1f4b93ead3ef546e
 
 build:
-  number: 0
+  number: 1
   script: "cargo install --no-track --locked --verbose --root \"${PREFIX}\" --path ."
   run_exports:
     - {{ pin_subpackage(name, max_pin="x.x") }}
@@ -29,3 +29,8 @@ about:
    license_family: MIT
    license_file: LICENSE
    summary: fastlin, ultra-fast MTBC lineage typing
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64
diff --git a/recipes/flumutdb/meta.yaml b/recipes/flumutdb/meta.yaml
index 61b8b678f0783..d344a18a237cf 100644
--- a/recipes/flumutdb/meta.yaml
+++ b/recipes/flumutdb/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "flumutdb" %}
-{% set version = "6.2" %}
+{% set version = "6.3" %}
 
 package:
   name: {{ name|lower }}
@@ -8,7 +8,7 @@ package:
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/flumutdb-{{ version }}.tar.gz
 
-  sha256: 7a604b2c2b0eeebf3dcb453b597d012bfed4d768821799c8b6598b2af3caf625
+  sha256: a98b7eaf5c821129b8cdb9d740d00d9ecb87f5d6c253112de8105713c0e1a732
 
 build:
   run_exports: 
diff --git a/recipes/gdc-client/meta.yaml b/recipes/gdc-client/meta.yaml
index 45280452bdb3d..22e25c0ab7aa4 100644
--- a/recipes/gdc-client/meta.yaml
+++ b/recipes/gdc-client/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "gdc-client" %}
-{% set version = "2.2" %}
+{% set version = "2.3" %}
 
 package:
   name: {{ name }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://github.com/NCI-GDC/gdc-client/archive/{{ version }}.tar.gz 
-  sha256: 87a5833fda42a26dd5dc53ace529cb141a48ae855b2ca4c66d132a5a14de6382
+  sha256: c4617516d84572135ee21b3b0bbaf4a5d360dcfe752ef70ba89c156ab64d1870
 
 build:
   number: 0
diff --git a/recipes/gencove/meta.yaml b/recipes/gencove/meta.yaml
index eb20892dca0de..4649cd2a3103b 100644
--- a/recipes/gencove/meta.yaml
+++ b/recipes/gencove/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "gencove" %}
-{% set version = "2.20.0" %}
-{% set sha256 = "8cfb183c5bd57bd7229b5248b0fbb42c547e4a766111db82c58853cfce281352" %}
+{% set version = "2.20.1" %}
+{% set sha256 = "78a8d24819def42643c16981c23f68d305321982be035d90274a6f190be54a9d" %}
 
 package:
   name: {{ name }}
diff --git a/recipes/geofetch/meta.yaml b/recipes/geofetch/meta.yaml
index bddae8d83699a..fcbc65091e017 100644
--- a/recipes/geofetch/meta.yaml
+++ b/recipes/geofetch/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "geofetch" %}
-{% set version = "0.12.6" %}
+{% set version = "0.12.7" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 7ce07c05bad3f18b6f44b79579342604c2b56890e1dec293373b462bf06690b6
+  sha256: c7820852dcb5a619a510616b0ca80f402a6a2a60f95d081ea7e174b387ec3e36
 
 build:
   number: 0
diff --git a/recipes/methylmap/meta.yaml b/recipes/methylmap/meta.yaml
index 2deb96f13c1c9..b3ef7a670cf72 100644
--- a/recipes/methylmap/meta.yaml
+++ b/recipes/methylmap/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "methylmap" %}
-{% set version = "0.4.6" %}
+{% set version = "0.5.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
-  sha256: ff94b6d5b75c704af8ced7b0c0187c1a4d8bfb7cf3565bde09ea46d2c9e44963
+  sha256: 80d1b7970fd88f85238c9adc4b2a0434b2d097d0c823c30439917af4cad3d3e1
 
 build:
   number: 0
@@ -29,10 +29,12 @@ requirements:
     - plotly >=5.4.0
     - pyranges >=0.0.77
     - tabix
-#    - modbam2bed ## not available in bioconda, only through epi2me-labs
     - scipy
     - dash
-
+    - dash-bootstrap-components
+    - tqdm
+    - ont-modkit
+    
 test:
   imports:
     - methylmap
diff --git a/recipes/mgems/build.sh b/recipes/mgems/build.sh
index 6ba573ff2b226..df3e14ac25675 100644
--- a/recipes/mgems/build.sh
+++ b/recipes/mgems/build.sh
@@ -1,5 +1,7 @@
 #!/bin/bash
 
+set -xe
+
 mkdir -p $PREFIX/bin
 
 mkdir build
diff --git a/recipes/mgems/meta.yaml b/recipes/mgems/meta.yaml
index 1eed62d36b021..be00e71ac1a41 100644
--- a/recipes/mgems/meta.yaml
+++ b/recipes/mgems/meta.yaml
@@ -10,7 +10,7 @@ source:
   sha256: c16db45f575d039ca5219b9bc7b7a4dc4bc3ceb3239b2a61085106d3d666b57a
 
 build:
-  number: 0
+  number: 1
   run_exports:
     - {{ pin_subpackage('mgems', max_pin="x") }}
 
@@ -41,6 +41,9 @@ about:
   dev_url: https://github.com/PROBIC/mGEMS
 
 extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64
   identifiers:
     - doi:10.1099/mgen.0.000691
   recipe-maintainers:
diff --git a/recipes/msweep/meta.yaml b/recipes/msweep/meta.yaml
index 4837f75c902cf..c3f6dfbac8a1b 100644
--- a/recipes/msweep/meta.yaml
+++ b/recipes/msweep/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "mSWEEP" %}
-{% set version = "2.1.2" %}
-{% set sha256 = "fd6e384bed01e08a64463d40b7cfba79dc6ba7def60c69b31ca5fc5b55551a22" %}
+{% set version = "2.2.0" %}
+{% set sha256 = "9f2cbaaa877466a59171a4e74fe26d462657b62ae0e3b464672e44490a6f3d73" %}
 {% set user = "PROBIC" %}
 
 package:
diff --git a/recipes/pastml/meta.yaml b/recipes/pastml/meta.yaml
index 18087182c28db..8dbd1a80f9a9e 100644
--- a/recipes/pastml/meta.yaml
+++ b/recipes/pastml/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pastml" %}
-{% set version = "1.9.46" %}
+{% set version = "1.9.48" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: cf127cb64693edf587dc3472de87c876d6603cf2215ca7b0bdf4d879df6223ff
+  sha256: eb7821555498a0535e4a9a7415b2bdb98695cf85787380664886717f22f7e6d4
 
 build:
   number: 0
diff --git a/recipes/querynator/meta.yaml b/recipes/querynator/meta.yaml
index d6936b6ac72d9..c8abd1a63d7bb 100644
--- a/recipes/querynator/meta.yaml
+++ b/recipes/querynator/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "querynator" %}
-{% set version = "0.5.4" %}
+{% set version = "0.5.5" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,7 +7,7 @@ package:
 
 source:
   url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz"
-  sha256: 803aff3939b21ce35f92a1d39bd2c4db2f9a8cc1f96a409e939ef3bbeb1fbaf2
+  sha256: 32536a2b03b8e7590f01dc7edea5af486a0ffc04126a7370dd1e10e2045357b1
 
 build:
   number: 0
diff --git a/recipes/r-mfassignr/meta.yaml b/recipes/r-mfassignr/meta.yaml
index c2d1902a1d541..864f0c3dcd2cf 100644
--- a/recipes/r-mfassignr/meta.yaml
+++ b/recipes/r-mfassignr/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "mfassignr" %}
-{% set version = "1.0.3" %}
+{% set version = "1.1.0" %}
 {% set github = "https://github.com/RECETOX" %}
 
 package:
@@ -8,7 +8,7 @@ package:
 
 source:
   url: "{{ github }}/MFAssignR/archive/refs/tags/v{{ version }}.tar.gz"
-  sha256: facb0d53f39d25f7c8ea6a04d87d218a4bf3e72c4b0257f1c028f40f99962a22
+  sha256: 01622b0b0662d9ffb7a504ffe7a833d70b5b276fdef40e06aa1d476dc32f6095
 
 build:
   number: 0
@@ -27,12 +27,14 @@ requirements:
     - r-tidyr >=0.8.1
     - r-ggplot2 >=3.0.0
     - r-colorRamps >=2.3
+    - r-gtools >=3.9.5
   run:
     - r-base >=3.4.1
     - r-dplyr >=0.7.6
     - r-tidyr >=0.8.1
     - r-ggplot2 >=3.0.0
     - r-colorRamps >=2.3
+    - r-gtools >=3.9.5
 
 test:
   commands:
diff --git a/recipes/saccharis/meta.yaml b/recipes/saccharis/meta.yaml
index dacd35cfbd8fd..9353926ac29f9 100644
--- a/recipes/saccharis/meta.yaml
+++ b/recipes/saccharis/meta.yaml
@@ -1,18 +1,19 @@
 {% set name = "SACCHARIS" %}
 {% set version = "2.0.1" %}
-{% set hash = "b2bce5fb1d2c959df571735634de5b68fd175148978613e6fc0daa24b3e25df9" %}
+{% set hash = "BA68CAB1070A11D5D4F2335CB770E1603ED54E1FB4B52A31DB4CA9A6CBBD6F7E" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v{{ version }}/saccharis-{{ version }}.tar.gz
+#  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v{{ version }}/saccharis-{{ version }}.tar.gz # go back to this method once 2.0.1 is fixed
+  url: https://github.com/saccharis/SACCHARIS_2/releases/download/v2.0.0.dev21/saccharis-2.0.0.dev21.tar.gz
   sha256: {{ hash|lower }}
 
 build:
   noarch: python
-  number: 0
+  number: 1
   script: {{ PYTHON }} setup.py install --single-version-externally-managed --record=record.txt
   preserve_egg_dir: True  # added because the entry points below seem to be causing a build error
   entry_points:
diff --git a/recipes/sam2pairwise/build.sh b/recipes/sam2pairwise/build.sh
new file mode 100644
index 0000000000000..4d70a6638a306
--- /dev/null
+++ b/recipes/sam2pairwise/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+
+mkdir -p $PREFIX/bin
+
+cd src
+make CC=$CXX CXX=$CXX
+cp sam2pairwise $PREFIX/bin
diff --git a/recipes/sam2pairwise/meta.yaml b/recipes/sam2pairwise/meta.yaml
new file mode 100644
index 0000000000000..fd0995c223f9b
--- /dev/null
+++ b/recipes/sam2pairwise/meta.yaml
@@ -0,0 +1,39 @@
+{% set name = "sam2pairwise" %}
+{% set version = "1.0.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+build:
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name, max_pin="x") }}
+
+source:
+  url: https://github.com/mlafave/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: 899d3db071cc248870bbedbdb39784de4c54c9a7888bc408022e809ace47ec0e
+  patches:
+    - patch.txt
+
+requirements:
+  build:
+    - {{ compiler('cxx') }}
+    - make
+
+test:
+  commands:
+    - sam2pairwise --version
+
+about:
+  home: https://github.com/mlafave/sam2pairwise
+  license: MIT
+  license_file: LICENSE
+  summary: 'sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read'
+  doc_url: https://github.com/mlafave/sam2pairwise/blob/master/README.md
+  dev_url: https://github.com/mlafave/sam2pairwise
+
+extra:  
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64
diff --git a/recipes/sam2pairwise/patch.txt b/recipes/sam2pairwise/patch.txt
new file mode 100644
index 0000000000000..35031e34c8af2
--- /dev/null
+++ b/recipes/sam2pairwise/patch.txt
@@ -0,0 +1,10 @@
+--- src/Makefile	2014-08-22 13:02:24.000000000 -0700
++++ src/Makefile_new	2024-09-11 10:27:50.000000000 -0700
+@@ -1,5 +1,5 @@
+-CXX = g++
+-CC = g++
++CXX ?= g++
++CC ?= g++
+ 
+ sam2pairwise:		sam2pairwise.o isolate_md.o shift_cigar.o shift_md.o translate_cigar.o translate_md.o 
+ 
diff --git a/recipes/snakemake-executor-plugin-slurm/meta.yaml b/recipes/snakemake-executor-plugin-slurm/meta.yaml
index 3c0bfb35d7ec2..3fa0f9862074f 100644
--- a/recipes/snakemake-executor-plugin-slurm/meta.yaml
+++ b/recipes/snakemake-executor-plugin-slurm/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "snakemake-executor-plugin-slurm" %}
-{% set version = "0.10.0" %}
+{% set version = "0.10.2" %}
 
 package:
   name: {{ name|lower }}
@@ -7,7 +7,7 @@ package:
 
 source:
   url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/snakemake_executor_plugin_slurm-{{ version }}.tar.gz
-  sha256: d970bd08e00f1664adbd3c421c956b2ce926359ff10a4d7650c444c1179bec3f
+  sha256: 919beb114785545f3cc187988f9257a183f1a2c76593e8a8559b87962ebd2651
 
 build:
   noarch: python
diff --git a/recipes/strangepg/meta.yaml b/recipes/strangepg/meta.yaml
index ed51626a06e44..fd79c9b8764a1 100644
--- a/recipes/strangepg/meta.yaml
+++ b/recipes/strangepg/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "strangepg" %}
-{% set version = "0.8.3" %}
-{% set ref = "567ed9d583766ab7cdb4e28261c8a611334a7472" %}
+{% set version = "0.8.4" %}
+{% set ref = "f7112e4e3a43eef2e747df502a3a1e5e828f24de" %}
 
 package:
   name: {{ name }}
@@ -8,7 +8,7 @@ package:
 
 source:
   url: https://github.com/qwx9/{{ name }}/archive/{{ ref }}.tar.gz
-  sha256: d33869f687fad3b8756565da727014a2cdf2dea3d7197816a8af1a8390e113cd
+  sha256: 08f1f22c40b8ab5a0cd92576e8b2cba5cf65726f5d0ddca286f9883a69c5d2e5
 
 build:
   number: 0
diff --git a/recipes/strangepg/run_test.sh b/recipes/strangepg/run_test.sh
index 1f8f7099292a5..0093b29f85b73 100644
--- a/recipes/strangepg/run_test.sh
+++ b/recipes/strangepg/run_test.sh
@@ -1,6 +1,6 @@
 #!/bin/sh -e
 # https://github.com/bioconda/bioconda-recipes/pull/29042#issuecomment-864465780
 
-strpg -h 2>/dev/null
-strpg /dev/mordor 2>/dev/null || [[ $? == 1 ]]
+strangepg -h 2>/dev/null
+strangepg /dev/mordor 2>/dev/null || [[ $? == 1 ]]
 echo | strawk -f cmd/main.awk
diff --git a/recipes/tribal/meta.yaml b/recipes/tribal/meta.yaml
index fc988e2ff8264..dfc122ff0d268 100644
--- a/recipes/tribal/meta.yaml
+++ b/recipes/tribal/meta.yaml
@@ -10,7 +10,7 @@ source:
     sha256: 3859295c1e615ce9ce5d34e73c9dea33a08a105a502096e7640e0feeda83756e
 
 build:
-  number: 0 
+  number: 1
   run_exports:
     - {{ pin_subpackage('tribal', max_pin='x.x') }} 
   script:
@@ -53,3 +53,8 @@ about:
   doc_url: "https://elkebir-group.github.io/TRIBAL"
   license: "BSD-3-Clause"
   summary: "TRIBAL is a package to infer B cell lineage trees from single-cell RNA sequencing data."
+
+extra:
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64