From cdada4aa15252363db5b3a7afcffb45a91037a1b Mon Sep 17 00:00:00 2001
From: SHANG Jiayu <Kenneth.Shang@foxmail.com>
Date: Thu, 31 Oct 2024 12:28:25 +0800
Subject: [PATCH] Update PhaBOX 2.1.2

Update PhaBOX to 2.1.2 version and add new requirements
---
 recipes/phabox/meta.yaml | 60 +++++++++++++++++++++++-----------------
 1 file changed, 34 insertions(+), 26 deletions(-)

diff --git a/recipes/phabox/meta.yaml b/recipes/phabox/meta.yaml
index 33d901868c12f..b3bdaef73255b 100644
--- a/recipes/phabox/meta.yaml
+++ b/recipes/phabox/meta.yaml
@@ -1,61 +1,69 @@
 {% set name = "PhaBOX" %}
-{% set version = "2.1.0" %}
+{% set version = "2.1.2" %}
 
 package:
   name: "{{ name|lower }}"
   version: "{{ version }}"
 
 source:
-  url: https://github.com/KennthShang/{{ name }}/archive/refs/tags/{{ version }}.tar.gz
-  sha256: 0ffe4da03ccc2aac77c17866033ce513f72a5ecdf9df108abbcdbfced438b04c
+  url: https://github.com/KennthShang/{{ name }}/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: d23a9d0bd68c49e8729ae893a7436f2b907e745637450b3a473c3a88762dab75
 
 build:
   number: 0
   noarch: python
   script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
   entry_points:
-    - phabox2 = phabox2.phabox2:main
-  run_exports:
-    - {{ pin_subpackage('phabox', max_pin="x.x") }}
+    - phabox2=phabox2.phabox2:main
 
 requirements:
   host:
-    - pip
-    - python >=3.8
+    - python
     - setuptools
   run:
-    - python >=3.8
-    - biopython >=1.84
-    - datasets >=3
-    - kcounter >=0.1.1
-    - fasttree >=2.1.11
-    - mafft >=7.525
-    - networkx >=3.4
-    - numpy >=1.26
-    - pandas >=2
-    - prodigal-gv >=2.11.0
-    - pyarrow >=16
-    - pytorch >=2.4
-    - scipy >=1.14
-    - seaborn-base >=0.13.2
-    - transformers >=4
+    - python =3.10.14
+    - diamond =0.9.14
+    - blast =2.16.0 
+    - mcl =22.282
+    - fasttree =2.1.11 
+    - kcounter =0.1.1 
+    - mafft =7.525
+    - numpy =1.26.4 
+    - pandas =2.2.3 
+    - networkx =3.4.2 
+    - seaborn-base =0.13.2 
+    - biopython =1.84 
+    - tqdm =4.66.5 
+    - scipy =1.14.1
+    - datasets
+    - transformers
+    - pytorch
+    - triton
+    - accelerate
+    - prodigal-gv
 
 test:
   commands:
     - phabox2 --help
 
 about:
-  home: "https://phage.ee.cityu.edu.hk"
+  home: https://github.com/KennthShang/PhaBOX
   license: "AFL-3.0"
   license_family: OTHER
   license_file: "LICENSE.md" 
-  summary: "Phage BOX is a Python library for phage-related tasks."
+  summary: Virus identification and analysis tool set
   dev_url: "https://github.com/KennthShang/PhaBOX"
   doc_url: "https://github.com/KennthShang/PhaBOX/wiki"
 
 extra:
   recipe-maintainers:
-    - bernt-matthias
+    - SHANG Jiayu
+    - PENG Cheng
   identifiers:
     - doi:10.1093/bioadv/vbad101
     - biotools:phabox
+
+channels:
+  - bioconda
+  - conda-forge
+  - defaults