From c633590ce044215cb89a0e36fd555cc53abacba2 Mon Sep 17 00:00:00 2001
From: Bioconda Bot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 29 Aug 2019 07:53:32 -0600
Subject: [PATCH] Update paragraph to 2.3 (#16539)

Package uploads complete: [ci skip]
 - biocontainers/paragraph:2.3--h8908b6f_0
 - linux-64/paragraph-2.3-h8908b6f_0.tar.bz2

Co-authored-by: dpryan79 <dpryan79@gmail.com>
Co-authored-by: Devon Ryan <dpryan79@users.noreply.github.com>
---
 recipes/paragraph/build.sh  |  3 ++-
 recipes/paragraph/meta.yaml | 12 +++++-------
 2 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/recipes/paragraph/build.sh b/recipes/paragraph/build.sh
index 86e35cdbd7c21..3f65ed3cfefa9 100644
--- a/recipes/paragraph/build.sh
+++ b/recipes/paragraph/build.sh
@@ -5,10 +5,11 @@ sed -i.bak "s/-Werror //" src/cmake/cxx.cmake
 
 # external htslib.a means we need -lz and co
 sed -i.bak "s/\${LIBLZMA_LIBRARIES}/\${LIBLZMA_LIBRARIES} \${LIBBZIP2_LIBRARIES} \${LIBZLIB_LIBRARIES}/;s/libhts.a/libhts.so/" src/cmake/GetHtslib.cmake
+sed -i.bak "53d" CMakeLists.txt
 
 mkdir build
 pushd build
 export HTSLIB_INSTALL_PATH=${PREFIX}
-cmake ../ -DCMAKE_CXX_COMPILER=${CXX} -DCMAKE_C_COMPILER=${CC} -DBOOST_ROOT=${PREFIX} -DCMAKE_INSTALL_PREFIX=${PREFIX} -DHTSLIB_INSTALL_PATH=${PREFIX} -DCMAKE_CXX_FLAGS="${CXXFLAGS} -Wno-deprecated-declarations"
+cmake ../ -DCMAKE_CXX_COMPILER=${CXX} -DCMAKE_C_COMPILER=${CC} -DBOOST_ROOT=${BUILD_PREFIX} -DCMAKE_INSTALL_PREFIX=${PREFIX} -DHTSLIB_INSTALL_PATH=${PREFIX} -DCMAKE_CXX_FLAGS="${CXXFLAGS} -Wno-deprecated-declarations"
 make 
 make install
diff --git a/recipes/paragraph/meta.yaml b/recipes/paragraph/meta.yaml
index 4c1a267f96c9f..c0d8f44d9d786 100644
--- a/recipes/paragraph/meta.yaml
+++ b/recipes/paragraph/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "paragraph" %}
-{% set version = "2.2b" %}
+{% set version = "2.3" %}
 
 package:
   name: "{{ name|lower }}"
@@ -7,10 +7,10 @@ package:
 
 source:
   url: https://github.com/Illumina/{{ name }}/archive/v{{ version }}.tar.gz
-  sha256: 9ee8f566c1c8159e3ec850dd682739c9913e540a66d9dd610e0cfc51a526bddc
+  sha256: 6394314e42005026893a305362a1fed58d37f2ca02ed5fc6c54d4c5d12caf1eb
 
 build:
-  skip: True  # [py27 or osx]
+  skip: True  # [osx]
   number: 0
 
 requirements:
@@ -18,15 +18,13 @@ requirements:
     - "{{ compiler('c') }}"
     - "{{ compiler('cxx') }}"
     - cmake
-  host:
-    - python
     - boost-cpp
-    - boost
+  host:
     - htslib
     - zlib
     - bzip2
   run:
-    - python
+    - python >=3
     - htslib
     - zlib
     - bzip2