From c332796b714d7009ee384351f3fe5b583a58ccb2 Mon Sep 17 00:00:00 2001
From: Bioconda Bot <47040946+BiocondaBot@users.noreply.github.com>
Date: Mon, 21 Oct 2024 03:45:00 -0400
Subject: [PATCH] Update abismal to 3.2.4 (#51508)

* Update abismal to 3.2.4

* clean up recipe

* add additional platforms

* add M4

---------

Co-authored-by: mencian <joshua.zhuang@yahoo.com>
---
 recipes/abismal/build.sh  |  9 +++++++--
 recipes/abismal/meta.yaml | 25 ++++++++++++++++---------
 2 files changed, 23 insertions(+), 11 deletions(-)

diff --git a/recipes/abismal/build.sh b/recipes/abismal/build.sh
index 66d0cf72332e6..69fef46ab9252 100644
--- a/recipes/abismal/build.sh
+++ b/recipes/abismal/build.sh
@@ -1,4 +1,9 @@
 #!/bin/bash
-./configure --prefix=$PREFIX
-make CXXFLAGS="-O3 -D_LIBCPP_DISABLE_AVAILABILITY"
+
+export M4="${BUILD_PREFIX}/bin/m4"
+
+autoreconf -if
+./configure --prefix="$PREFIX"
+
+make CXXFLAGS="${CXXFLAGS} -O3 -D_LIBCPP_DISABLE_AVAILABILITY"
 make install
diff --git a/recipes/abismal/meta.yaml b/recipes/abismal/meta.yaml
index 43fa4b6849707..0960ba5728525 100644
--- a/recipes/abismal/meta.yaml
+++ b/recipes/abismal/meta.yaml
@@ -1,4 +1,4 @@
-{% set version = "3.2.3" %}
+{% set version = "3.2.4" %}
 
 package:
   name: abismal
@@ -10,10 +10,9 @@ build:
     # abismal is currently not intended to be stable between minor versions (x.x).
     - {{ pin_subpackage('abismal', max_pin="x.x") }}
 
-
 source:
   url: https://github.com/smithlabcode/abismal/releases/download/v{{ version }}/abismal-{{ version }}.tar.gz
-  sha256: 0698ca408feb7e2650468e66dfdd4615e9405f64cd5496272fe2226cefd21322
+  sha256: 822e5efe322f989c561a1fb728bd6f57f49d94033620eb1bc5046f22a8492544
 
 requirements:
   build:
@@ -21,21 +20,26 @@ requirements:
     - {{ compiler('cxx') }}
     - autoconf
     - automake
-    - llvm-openmp  # [osx]
-    - libgomp      # [linux]
+    - libtool
   host:
     - zlib
     - htslib
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
   run:
     - htslib
+    - llvm-openmp  # [osx]
+    - libgomp      # [linux]
 
 about:
-  home: https://github.com/smithlabcode/abismal
-  license: GPL-3.0-only
+  home: "https://github.com/smithlabcode/abismal"
+  license: "GPL-3.0-only"
+  license_family: GPL3
   license_file: LICENSE
   summary: |
-    abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads
-  doc_url: 'https://github.com/smithlabcode/abismal/blob/master/docs/MANUAL.md'
+    abismal is a fast and memory-efficient mapper for short bisulfite sequencing reads.
+  doc_url: 'https://github.com/smithlabcode/abismal/blob/v{{ version }}/docs/MANUAL.md'
+  dev_url: "https://github.com/smithlabcode/abismal"
 
 test:
   commands:
@@ -45,3 +49,6 @@ extra:
   recipe-maintainers:
     - andrewdavidsmith
     - guilhermesena1
+  additional-platforms:
+    - linux-aarch64
+    - osx-arm64