From b623d5bc4ef783c9d94d398141e11e55ee0e6edd Mon Sep 17 00:00:00 2001
From: qdu-bioinfo <74221639+qdu-bioinfo@users.noreply.github.com>
Date: Tue, 5 Nov 2024 17:52:41 +0800
Subject: [PATCH] Add fc-virus recipe (#51809)
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

* Create meta.yaml

* Update meta.yaml

* Update meta.yaml

* Create LICENSE

* Create build.sh

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update build.sh

* Delete recipes/fc/build.sh

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Create build.sh

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update build.sh

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* Update recipes/fc/meta.yaml

Co-authored-by: Björn Grüning <bjoern@gruenings.eu>

* Update meta.yaml

* Update meta.yaml

* Update build.sh

* Update meta.yaml

* try fc

* edit source URL

* Update build.sh

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Update meta.yaml

* Delete recipes/fc/LICENSE

---------

Co-authored-by: Björn Grüning <bjoern@gruenings.eu>
Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
---
 recipes/fc/build.sh  |  7 +++++++
 recipes/fc/meta.yaml | 37 +++++++++++++++++++++++++++++++++++++
 2 files changed, 44 insertions(+)
 create mode 100644 recipes/fc/build.sh
 create mode 100644 recipes/fc/meta.yaml

diff --git a/recipes/fc/build.sh b/recipes/fc/build.sh
new file mode 100644
index 0000000000000..6725e40accbf6
--- /dev/null
+++ b/recipes/fc/build.sh
@@ -0,0 +1,7 @@
+#!/bin/bash
+set -xe
+make CXX="${CXX}" INCLUDES="-I$PREFIX/include" CFLAGS+="${CFLAGS} -g -Wall -O2 -L$PREFIX/lib"
+#chmod +x ./bin/fc-virus
+chmod 777 ./bin/fc-virus
+mkdir -p ${PREFIX}/bin
+cp -f ./bin/fc-virus ${PREFIX}/bin
diff --git a/recipes/fc/meta.yaml b/recipes/fc/meta.yaml
new file mode 100644
index 0000000000000..15c1e2335f04d
--- /dev/null
+++ b/recipes/fc/meta.yaml
@@ -0,0 +1,37 @@
+{% set name = "fc" %}
+{% set version = "1.0.1" %}
+
+package:
+  name: {{ name }}
+  version: {{ version }}
+
+source:
+  url: "https://github.com/qdu-bioinfo/fc-virus/archive/refs/tags/v{{ version }}.tar.gz"
+  sha256: "0f3b5f76ca17c90c7553d35280de6c0248802fad088a7fe653652653e3170944"
+
+build:
+  number: 0
+  skip: True  # [osx]
+  run_exports:
+    - {{ pin_subpackage("fc", max_pin="x") }}
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+    - {{ compiler('cxx') }}
+  host:
+    - zlib
+    - boost-cpp
+
+test:
+  commands:
+    - fc-virus --help
+
+about:
+  home: "https://github.com/qdu-bioinfo/fc-virus"
+  license: MIT
+  license_family: MIT
+  license_file: LICENSE
+  summary: "Accurate Assembly of Full-length Consensus for Viral Quasispecies."
+  dev_url: "https://github.com/qdu-bioinfo/fc-virus"