diff --git a/recipes/busco/build.sh b/recipes/busco/build.sh index ea804dee9d30d..a85611463c9f3 100644 --- a/recipes/busco/build.sh +++ b/recipes/busco/build.sh @@ -2,9 +2,9 @@ set -euxo pipefail -"${PYTHON}" -m pip install . --no-deps -vv +"${PYTHON}" -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv mkdir -p $PREFIX/bin/ -cp bin/busco $PREFIX/bin/busco #python script +cp bin/busco $PREFIX/bin/busco #python script cp scripts/generate_plot.py $PREFIX/bin/generate_plot.py diff --git a/recipes/busco/meta.yaml b/recipes/busco/meta.yaml index 301a04bc398ed..02a82468a2c85 100644 --- a/recipes/busco/meta.yaml +++ b/recipes/busco/meta.yaml @@ -1,16 +1,16 @@ {% set name = "busco" %} -{% set version = "5.7.1" %} -{% set sha256 = "d57066b68d533f0b86518653430ba47b748ef14db56d2a992601d3e26096cad6" %} +{% set version = "5.8.0" %} +{% set sha256 = "201218349224d35b4ad2de345505710e7778904e0f1158874b2a4d0cb2dce1ed" %} package: name: busco version: {{ version }} build: - number: 1 + number: 0 noarch: python run_exports: - - {{ pin_subpackage(name, max_pin="x.x") }} + - {{ pin_subpackage(name, max_pin="x") }} source: url: https://gitlab.com/ezlab/busco/-/archive/{{ version }}/busco-{{ version }}.tar.gz @@ -24,13 +24,13 @@ requirements: - python >=3.3 - pip - wget - - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0 - - hmmer >=3.1b2 # sepp needs this version + - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0 + - hmmer >=3.1b2 # sepp needs this version - augustus >=3.3 - biopython >=1.79 - prodigal - sepp >=4.3.10 - - metaeuk >=6.a5d39d9 # needed for gff bug fix + - metaeuk >=6.a5d39d9 # needed for gff bug fix - pandas - bbmap - miniprot @@ -38,15 +38,15 @@ requirements: run: - python >=3.3 - wget - - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0 - - hmmer >=3.1b2 # sepp needs this version + - blast >=2.10.1 # There is a multithreading problem for all BLAST versions between 2.4 and 2.10.0 + - hmmer >=3.1b2 # sepp needs this version - augustus >=3.3 - biopython >=1.79 - r-base - r-ggplot2 >=2.2.1 - prodigal - sepp >=4.3.10 - - metaeuk >=6.a5d39d9 # needed for gff bug fix + - metaeuk >=6.a5d39d9 # needed for gff bug fix - pandas - bbmap - miniprot @@ -62,16 +62,17 @@ test: - test_data about: - home: https://busco.ezlab.org/ + home: "https://busco.ezlab.org" license: MIT license_family: MIT license_file: LICENSE - summary: Assessment of assembly completeness using Universal Single Copy Orthologs + summary: "Assessment of assembly completeness using Universal Single Copy Orthologs." description: BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evolutionarily informed expectations of gene content from near-universal single-copy orthologs selected from OrthoDB. - dev_url: https://gitlab.com/ezlab/busco + dev_url: "https://gitlab.com/ezlab/busco" + doc_url: "https://busco.ezlab.org/busco_userguide.html" extra: container: @@ -84,6 +85,4 @@ extra: - doi:10.1093/bioinformatics/btv351 - usegalaxy-eu:busco recipe-maintainers: - - silask - - matsepp - berkelem