diff --git a/recipes/delly/meta.yaml b/recipes/delly/meta.yaml index 21458f52a32ed..7928647fac015 100644 --- a/recipes/delly/meta.yaml +++ b/recipes/delly/meta.yaml @@ -1,5 +1,5 @@ -{% set version = "1.2.9" %} -{% set sha256 = "084aec699f266e21b457db2cb86c75d73e29b071bdd837cb987561942aa01510" %} +{% set version = "1.3.1" %} +{% set sha256 = "914a29c301556746031586c5880e70ad7f31bd7899cc4e47b23ee4d5426761ae" %} package: name: delly diff --git a/recipes/earlgrey/meta.yaml b/recipes/earlgrey/meta.yaml index a9772ad58ae11..d5f4d1a732b90 100644 --- a/recipes/earlgrey/meta.yaml +++ b/recipes/earlgrey/meta.yaml @@ -11,7 +11,8 @@ source: sha256: {{ sha256 }} build: - number: 1 + number: 2 + skip: True # [osx] run_exports: - {{ pin_subpackage('earlgrey', max_pin='x') }} @@ -49,10 +50,13 @@ requirements: - r-viridis - r-cowplot - r-ggtext + - r-data.table + - r-magrittr - bedtools - emboss - pybedtools - samtools + - heliano test: commands: diff --git a/recipes/hmftools-chord/LICENSE b/recipes/hmftools-chord/LICENSE new file mode 100644 index 0000000000000..2aa0f78dd40e9 --- /dev/null +++ b/recipes/hmftools-chord/LICENSE @@ -0,0 +1,624 @@ +Copyright (C) 2016-2024 hartwigmedical + +GNU GENERAL PUBLIC LICENSE + Version 3, 29 June 2007 + +Copyright (C) 2007 Free Software Foundation, Inc. + Everyone is permitted to copy and distribute verbatim copies + of this license document, but changing it is not allowed. + + Preamble + + The GNU General Public License is a free, copyleft license for +software and other kinds of works. + + The licenses for most software and other practical works are designed +to take away your freedom to share and change the works. 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Limitation of Liability. + + IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING +WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS +THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY +GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE +USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF +DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD +PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS), +EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF +SUCH DAMAGES. + + 17. Interpretation of Sections 15 and 16. + + If the disclaimer of warranty and limitation of liability provided +above cannot be given local legal effect according to their terms, +reviewing courts shall apply local law that most closely approximates +an absolute waiver of all civil liability in connection with the +Program, unless a warranty or assumption of liability accompanies a +copy of the Program in return for a fee. + + END OF TERMS AND CONDITIONS + diff --git a/recipes/hmftools-chord/build.sh b/recipes/hmftools-chord/build.sh new file mode 100644 index 0000000000000..a1a96f8a03b8b --- /dev/null +++ b/recipes/hmftools-chord/build.sh @@ -0,0 +1,13 @@ +#!/bin/bash + +TGT="$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM" +[ -d "$TGT" ] || mkdir -p $TGT +[ -d "${PREFIX}/bin" ] || mkdir -p "${PREFIX}/bin" + +cd "${SRC_DIR}" +mv jar/chord*.jar $TGT/chord.jar +${R} CMD INSTALL --build src/chord/src/main/R/mutSigExtractor +${R} CMD INSTALL --build src/chord/src/main/R/CHORD + +cp $RECIPE_DIR/chord.sh $TGT/chord +ln -s $TGT/chord ${PREFIX}/bin/ diff --git a/recipes/hmftools-chord/chord.sh b/recipes/hmftools-chord/chord.sh new file mode 100755 index 0000000000000..4bfae1df1839a --- /dev/null +++ b/recipes/hmftools-chord/chord.sh @@ -0,0 +1,69 @@ +#!/bin/bash +# hmftools CHORD executable shell script +# https://github.com/hartwigmedical/hmftools/tree/master/chord +set -eu -o pipefail + +export LC_ALL=en_US.UTF-8 + +# Find original directory of bash script, resolving symlinks +# http://stackoverflow.com/questions/59895/can-a-bash-script-tell-what-directory-its-stored-in/246128#246128 +SOURCE="${BASH_SOURCE[0]}" +while [ -h "$SOURCE" ]; do # resolve $SOURCE until the file is no longer a symlink + DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )" + SOURCE="$(readlink "$SOURCE")" + [[ $SOURCE != /* ]] && SOURCE="$DIR/$SOURCE" # if $SOURCE was a relative symlink, we need to resolve it relative to the path where the symlink file was located +done +DIR="$( cd -P "$( dirname "$SOURCE" )" && pwd )" + +JAR_DIR=$DIR +ENV_PREFIX="$(dirname $(dirname $DIR))" +# Use Java installed with Anaconda to ensure correct version +java="$ENV_PREFIX/bin/java" + +# if JAVA_HOME is set (non-empty), use it. Otherwise keep "java" +if [ -n "${JAVA_HOME:=}" ]; then + if [ -e "$JAVA_HOME/bin/java" ]; then + java="$JAVA_HOME/bin/java" + fi +fi + +# extract memory and system property Java arguments from the list of provided arguments +# http://java.dzone.com/articles/better-java-shell-script +default_jvm_mem_opts="-Xms512m -Xmx1g" +jvm_mem_opts="" +jvm_prop_opts="" +pass_args="" +for arg in "$@"; do + case $arg in + '-D'*) + jvm_prop_opts="$jvm_prop_opts $arg" + ;; + '-XX'*) + jvm_prop_opts="$jvm_prop_opts $arg" + ;; + '-Xm'*) + jvm_mem_opts="$jvm_mem_opts $arg" + ;; + *) + if [[ ${pass_args} == '' ]] #needed to avoid preceeding space on first arg e.g. ' MarkDuplicates' + then + pass_args="$arg" + else + pass_args="$pass_args \"$arg\"" #quotes later arguments to avoid problem with ()s in MarkDuplicates regex arg + fi + ;; + esac +done + +if [ "$jvm_mem_opts" == "" ]; then + jvm_mem_opts="$default_jvm_mem_opts" +fi + +pass_arr=($pass_args) +if [[ ${pass_arr[0]:=} == com.hartwig.* ]] +then + eval "$java" $jvm_mem_opts $jvm_prop_opts -cp "$JAR_DIR/chord.jar" $pass_args +else + eval "$java" $jvm_mem_opts $jvm_prop_opts -jar "$JAR_DIR/chord.jar" $pass_args +fi +exit diff --git a/recipes/hmftools-chord/meta.yaml b/recipes/hmftools-chord/meta.yaml new file mode 100644 index 0000000000000..cb5e88a813be6 --- /dev/null +++ b/recipes/hmftools-chord/meta.yaml @@ -0,0 +1,51 @@ +{% set version = "2.1.0_beta" %} +{% set sha256_jar = "26d0a40e20635c4b797d28e0c7819b1653c9f8fa28180b9a556215d22387968c" %} +{% set sha256_src = "ed039e7b405130a1e52df71c3535c6a5ed8aab0f80724bc83df88ae14aeaa257" %} + +package: + name: hmftools-chord + version: '{{ version }}' + +source: + - folder: jar + url: https://github.com/hartwigmedical/hmftools/releases/download/chord-v{{ version }}/chord-{{ version }}.jar + sha256: '{{ sha256_jar }}' + - folder: src + url: https://github.com/hartwigmedical/hmftools/archive/refs/tags/chord-v{{ version }}.tar.gz + sha256: '{{ sha256_src }}' + +build: + noarch: generic + number: 0 + run_exports: + - {{ pin_subpackage("hmftools-chord", max_pin="x.x") }} + +requirements: + host: + - r-base + - r-randomforest + - r-stringr + - bioconductor-bsgenome + - bioconductor-bsgenome.hsapiens.ucsc.hg19 + - bioconductor-bsgenome.hsapiens.ucsc.hg38 + run: + - openjdk >=8 + - r-base + - r-randomforest + - r-stringr + - bioconductor-bsgenome + - bioconductor-bsgenome.hsapiens.ucsc.hg19 + - bioconductor-bsgenome.hsapiens.ucsc.hg38 + +test: + commands: + - $R -e "library('CHORD')" + - $R -e "library('mutSigExtractor')" + - 'chord com.hartwig.hmftools.chord.ChordRunner -version | grep CHORD' + +about: + home: https://github.com/hartwigmedical/hmftools/blob/master/chord/ + license: GPL-3.0-only + license_family: GPL3 + license_file: LICENSE + summary: Predict HRD using somatic mutations contexts diff --git a/recipes/hmftools-sage/meta.yaml b/recipes/hmftools-sage/meta.yaml index f42f1986c5c4a..14d85d65a3c30 100644 --- a/recipes/hmftools-sage/meta.yaml +++ b/recipes/hmftools-sage/meta.yaml @@ -1,17 +1,18 @@ {% set version = "4.0_beta" %} -{% set sha256 = "85854164b2d5558e0701d83f13d59072abad3109d70a92fc5f574ef29c29e917" %} +{% set beta_suffix = ".1" %} +{% set sha256 = "22a3495f4ebe425114af4b9ba472860b3e2fe16395e3223827d0b6eccba27eb3" %} package: name: hmftools-sage version: '{{ version }}' source: - url: https://github.com/hartwigmedical/hmftools/releases/download/sage-v{{ version }}/sage_v{{ version }}.jar + url: https://github.com/hartwigmedical/hmftools/releases/download/sage-v{{ version }}/sage_v{{ version }}{{ beta_suffix }}.jar sha256: '{{ sha256 }}' build: noarch: generic - number: 0 + number: 1 run_exports: - {{ pin_subpackage('hmftools-sage', max_pin="x") }} diff --git a/recipes/kmer-db/build.sh b/recipes/kmer-db/build.sh deleted file mode 100644 index 6a8bc644b0283..0000000000000 --- a/recipes/kmer-db/build.sh +++ /dev/null @@ -1,9 +0,0 @@ -#!/bin/bash - - -CFLAGS="$CFLAGS -I${PREFIX}/include" -LDFLAGS="$LDFLAGS -L${PREFIX}/lib" - -make CC="${CXX}" -install -d "${PREFIX}/bin" -install kmer-db "${PREFIX}/bin" diff --git a/recipes/kmer-db/meta.yaml b/recipes/kmer-db/meta.yaml index f8fca76dc2efc..96e4c9045fe3d 100644 --- a/recipes/kmer-db/meta.yaml +++ b/recipes/kmer-db/meta.yaml @@ -1,5 +1,14 @@ -{% set version = "1.11.1" %} -{% set sha256 = "63886057a752a890f492bf4ca7ec97435eceebb4ac5ecb5664c69ae2736eaa80" %} +{% set version = "2.2.2" %} + +{% set system = "x64_linux" %} # [linux and x86_64] +{% set system = "x64_mac" %} # [osx and x86_64] +{% set system = "arm64_linux" %} # [linux and aarch64] +{% set system = "arm64_mac" %} # [osx and arm64] + +{% set sha256 = "e4bccee6380b7c0bfb4746285d36af52a9874b1cf66d62a8862e8579097b5e77" %} # [linux and x86_64] +{% set sha256 = "bfb22576eef88293af4695d297b0b6d3cddc726a882e09ef29bd4684a705977f" %} # [osx and x86_64] +{% set sha256 = "62055ecaf81fac76cfc05a8cd64eba958d2c45350312556777dc4db7355a802a" %} # [linux and aarch64] +{% set sha256 = "6ba58753b1141a005e8a97bf581c1eada5cec6713a1f516518167f1da71b820b" %} # [osx and arm64] package: @@ -7,22 +16,18 @@ package: version: {{ version }} build: - number: 2 + number: 0 + run_exports: + - {{ pin_subpackage('kmer-db', max_pin='x') }} + script: | + mkdir -p "${PREFIX}/bin" + cp -v kmer-db "${PREFIX}/bin/" || { echo "Error: Failed to copy kmer-db binary"; exit 1; } + source: - url: https://github.com/refresh-bio/kmer-db/archive/v{{ version }}.tar.gz + url: https://github.com/refresh-bio/kmer-db/releases/download/v{{ version }}/kmer-db-v{{ version }}-{{ system }}.tar.gz sha256: {{ sha256 }} -requirements: - build: - - make - - {{ compiler('cxx') }} - - make - host: - - zlib - run: - - zlib - about: home: https://github.com/refresh-bio/kmer-db summary: "Kmer-db is a fast and memory-efficient tool for estimating evolutionary distances." @@ -33,3 +38,13 @@ about: test: commands: - kmer-db > /dev/null + - kmer-db -help + +extra: + additional-platforms: + - linux-aarch64 + - osx-arm64 + skip-lints: + - should_be_noarch_generic + - should_not_be_noarch_source + diff --git a/recipes/kmercamel/build.sh b/recipes/kmercamel/build.sh index 47971cd647aa0..c307c32663a4b 100644 --- a/recipes/kmercamel/build.sh +++ b/recipes/kmercamel/build.sh @@ -1,5 +1,7 @@ #!/bin/bash -make CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS}" +set -xe + +make -j ${CPU_COUNT} CXX="${CXX} ${CXXFLAGS} ${CPPFLAGS} ${LDFLAGS}" install -d "${PREFIX}/bin" install kmercamel "${PREFIX}/bin/" diff --git a/recipes/kmercamel/meta.yaml b/recipes/kmercamel/meta.yaml index 6917d5f0c952e..051d2eae13cd8 100644 --- a/recipes/kmercamel/meta.yaml +++ b/recipes/kmercamel/meta.yaml @@ -10,7 +10,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 run_exports: - {{ pin_subpackage('kmercamel', max_pin="x") }} @@ -36,3 +36,7 @@ about: license_file: LICENSE.txt summary: KmerCamel🐫 - compressing k-mer sets using masked superstrings +extra: + additional-platforms: + - linux-aarch64 + - osx-arm64 diff --git a/recipes/orthologer/meta.yaml b/recipes/orthologer/meta.yaml index a1b86b31a1bd7..8279dbe399fc0 100644 --- a/recipes/orthologer/meta.yaml +++ b/recipes/orthologer/meta.yaml @@ -1,6 +1,6 @@ {% set name = "orthologer" %} -{% set version = "3.4.2" %} -{% set sha256 = "fb8d11ef54d7232b150e5e46fbd15f9540a083064544d481f8fe9c9aea6b653e" %} +{% set version = "3.5.0" %} +{% set sha256 = "76bd68cd73d5989d658a6ba0ecefec84e674f85878b75904c76fa557ce5dd2b5" %} package: name: {{ name }} @@ -41,6 +41,7 @@ requirements: - diamond - biopython - numpy + - busco >=5.7.0 test: commands: @@ -51,7 +52,8 @@ about: license: GPL3 license_family: GPL3 license_file: LICENSE - summary: "Find orthologous genes as well as mapping to OrthoDB." + summary: Establish orthology among fasta files. + description: Map genes to OrthoDB as well as finding orthology among a set of fasta files. dev_url: https://gitlab.com/ezlab/orthologer_container doc_url: https://orthologer.ezlab.org/#on-orthodb-data diff --git a/recipes/patchify/meta.yaml b/recipes/patchify/meta.yaml new file mode 100644 index 0000000000000..6f3d4d0c196f1 --- /dev/null +++ b/recipes/patchify/meta.yaml @@ -0,0 +1,45 @@ +{% set name = "patchify" %} +{% set version = "0.2.3" %} + +package: + name: {{ name|lower }} + version: {{ version }} + +source: + url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/patchify-{{ version }}.tar.gz + sha256: 6cc409124f34ceee672f1931d818923f88f5116f323ac7bb9be7e6c5d0845502 + +build: + noarch: python + script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation + number: 0 + run_exports: + - {{ pin_subpackage('patchify', max_pin="x.x") }} + +requirements: + host: + - python >=3.7,<4.0 + - poetry >=0.12 + - poetry-core + - pip + run: + - python >=3.7.0,<4.0.0 + - numpy >=1.0.0,<2.0.0 + +test: + imports: + - patchify + commands: + - pip check + requires: + - pip + +about: + home: https://github.com/dovahcrow/patchify.py + summary: A library that helps you split image into small, overlappable patches, and merge patches back into the original image. + license: MIT + license_file: LICENSE + +extra: + recipe-maintainers: + - hexylena diff --git a/recipes/pgscatalog-utils/meta.yaml b/recipes/pgscatalog-utils/meta.yaml index 3d40d2938c335..9f2ccfa52bfaf 100644 --- a/recipes/pgscatalog-utils/meta.yaml +++ b/recipes/pgscatalog-utils/meta.yaml @@ -12,7 +12,7 @@ source: build: noarch: python script: {{ PYTHON }} -m pip install . -vvv --no-deps --no-build-isolation --no-cache-dir - number: 0 + number: 1 run_exports: - {{ pin_subpackage('pgscatalog-utils', max_pin='x.x') }} @@ -23,9 +23,9 @@ requirements: - pip run: - python >=3.10.0,<4.0.0 - - pgscatalog.calc >=0.2.1,<0.3.0 - - pgscatalog.core >=0.2.1,<0.3.0 - - pgscatalog.match >=0.2.1,<0.3.0 + - pgscatalog.calc >=0.3.0,<0.4.0 + - pgscatalog.core >=0.3.1,<0.4.0 + - pgscatalog.match >=0.3.3,<0.4.0 test: imports: @@ -33,6 +33,7 @@ test: - pgscatalog.calc - pgscatalog.core commands: + - pip check - pgscatalog-download --help - pgscatalog-combine --help - pgscatalog-match --help @@ -40,6 +41,8 @@ test: - pgscatalog-relabel --help - pgscatalog-aggregate --help - pgscatalog-ancestry-adjust --help + requires: + - pip about: home: https://github.com/PGScatalog/pygscatalog @@ -51,3 +54,5 @@ about: extra: recipe-maintainers: - nebfield + - smlmbrt + diff --git a/recipes/r-grain/meta.yaml b/recipes/r-grain/meta.yaml index b7779e3c6a07e..0ddbe0cd41069 100644 --- a/recipes/r-grain/meta.yaml +++ b/recipes/r-grain/meta.yaml @@ -1,4 +1,4 @@ -{% set version = '1.4.2' %} +{% set version = '1.4.3' %} package: name: r-grain @@ -8,10 +8,10 @@ source: url: - {{ cran_mirror }}/src/contrib/gRain_{{ version }}.tar.gz - {{ cran_mirror }}/src/contrib/Archive/gRain/gRain_{{ version }}.tar.gz - sha256: 487d5287e1d8b473e8dd96317744ffc77366a4a9f3056376f0bb766898acce74 + sha256: fb65cc5b2b057457684de24ad50c1ef6d9d65e0abd9c630ec71dd18594839d0a build: - number: 1 + number: 0 rpaths: - lib/R/lib/ - lib/ diff --git a/recipes/sequali/meta.yaml b/recipes/sequali/meta.yaml index 6ea35930a5604..24533e6037816 100644 --- a/recipes/sequali/meta.yaml +++ b/recipes/sequali/meta.yaml @@ -1,5 +1,5 @@ {% set name = "sequali" %} -{% set version = "0.11.1" %} +{% set version = "0.12.0" %} package: name: "{{ name|lower }}" @@ -7,10 +7,10 @@ package: source: url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz" - sha256: d528a9a6eceace4fa8f1ef29625954a759928e7bab02348ef8f92887442f9527 + sha256: 14ddcfbe91ab4e941c4e20f0e93e3ad83fba80aca40a3c3c499acd19ac0b9f3c build: - number: 2 + number: 0 entry_points: - sequali=sequali.__main__:main - sequali-report=sequali.__main__:sequali_report diff --git a/recipes/taxmyphage/meta.yaml b/recipes/taxmyphage/meta.yaml index cad6b75921845..7330003d33a96 100644 --- a/recipes/taxmyphage/meta.yaml +++ b/recipes/taxmyphage/meta.yaml @@ -1,5 +1,5 @@ {% set name = "taxmyphage" %} -{% set version = "0.3.1" %} +{% set version = "0.3.2" %} package: name: {{ name|lower }} @@ -7,7 +7,7 @@ package: source: url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/taxmyphage-{{ version }}.tar.gz - sha256: f3c6638ae347ecab7bef84fad71db1fecc922144a0bda8fe7d430d3bf628f00d + sha256: d15f63ec6a85960aeb9702dd3ad32a39808bab1c8b536a018fda1b12832ebc05 build: entry_points: diff --git a/recipes/tefinder/build.sh b/recipes/tefinder/build.sh new file mode 100644 index 0000000000000..62add9417c48d --- /dev/null +++ b/recipes/tefinder/build.sh @@ -0,0 +1,23 @@ +#!/bin/bash + +mkdir -p ${PREFIX}/bin + +export INCLUDES="-I${PREFIX}/include" +export LIBPATH="-L${PREFIX}/lib" +export CXXFLAGS="${CXXFLAGS} -O3 -I${PREFIX}/include" +export LDFLAGS="${LDFLAGS} -L${PREFIX}/lib" + +if [[ `uname` == "Darwin" ]]; then + export CONFIG_ARGS="-DCMAKE_FIND_FRAMEWORK=NEVER -DCMAKE_FIND_APPBUNDLE=NEVER" +else + export CONFIG_ARGS="" +fi + +cmake -S . -B build -DCMAKE_INSTALL_PREFIX="${PREFIX}" \ + -DCMAKE_BUILD_TYPE=Release -DCMAKE_CXX_COMPILER="${CXX}" \ + -DCMAKE_CXX_FLAGS="${CXXFLAGS}" \ + "${CONFIG_ARGS}" +cmake --build build --target install -j "${CPU_COUNT}" -v + +chmod 0755 bin/* +mv bin/* ${PREFIX}/bin diff --git a/recipes/tefinder/meta.yaml b/recipes/tefinder/meta.yaml new file mode 100644 index 0000000000000..5bf3b91c2d4b0 --- /dev/null +++ b/recipes/tefinder/meta.yaml @@ -0,0 +1,37 @@ +{% set name = "tefinder" %} +{% set version = "2.32" %} + +package : + name: {{ name }} + version: {{ version }} + +build: + number: 0 + run_exports: + - {{ pin_subpackage( 'tefinder', max_pin="x") }} + +source: + url: https://urgi.versailles.inra.fr/download/repet/te_finder_light-{{ version }}.tar.gz + sha256: 826cb7ba7bf0222126dd468c7cef420316fa11083b78ec6ceaa146e2ff9915ed + +requirements: + build: + - {{ compiler('cxx') }} + - make + - cmake + host: + - cppunit + run: + - blast + - blast-legacy + +about: + home: "https://forgemia.inra.fr/urgi-anagen/te_finder" + license: CeCILL + license_file: LICENSE + summary: "Programs for transposable element search and annotation in large eukaryotic genome sequence." + dev_url: "https://forgemia.inra.fr/urgi-anagen/te_finder" + +test: + commands: + - blaster2.32 -h >> /dev/null diff --git a/recipes/woltka/meta.yaml b/recipes/woltka/meta.yaml index f5fdbff852898..90ac9b472e926 100644 --- a/recipes/woltka/meta.yaml +++ b/recipes/woltka/meta.yaml @@ -1,50 +1,47 @@ {% set name = "woltka" %} -{% set version = "0.1.6" %} +{% set version = "0.1.7" %} package: - name: "{{ name|lower }}" - version: "{{ version }}" + name: {{ name|lower }} + version: {{ version }} source: - url: "https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz" - sha256: d1ffe069515284f6350e3129b5fa3a65b4a583105282c5af0a3997c30b7f8e99 + url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/woltka-{{ version }}.tar.gz + sha256: 7958b10a4f33511fd82c740cdb461fc03d1b7932e00ac6746b6eb5d8de3880f5 build: - number: 0 - noarch: python entry_points: - - woltka=woltka.cli:cli - script: "{{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation" + - woltka = woltka.cli:cli + noarch: python + script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation + number: 0 run_exports: - {{ pin_subpackage("woltka", max_pin="x.x") }} requirements: host: - - biom-format + - python >=3.6 + - hatchling - pip - - python - - setuptools run: + - python >=3.6 + - numba - biom-format - - python - - setuptools test: imports: - woltka - - woltka.q2 - - woltka.tests commands: + - pip check - woltka --help + requires: + - pip about: - home: "https://github.com/qiyunzhu/woltka" + home: https://github.com/qiyunzhu/woltka + summary: versatile meta-omic data classifier license: BSD-3-Clause - license_family: BSD license_file: LICENSE - summary: "versatile meta-omic data classifier" - doc_url: - dev_url: extra: recipe-maintainers: