diff --git a/recipes/bioconductor-dropletutils/build.sh b/recipes/bioconductor-dropletutils/build.sh new file mode 100644 index 0000000000000..da43ce2168312 --- /dev/null +++ b/recipes/bioconductor-dropletutils/build.sh @@ -0,0 +1,4 @@ +#!/bin/bash +mv DESCRIPTION DESCRIPTION.old +grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION +$R CMD INSTALL --build . \ No newline at end of file diff --git a/recipes/bioconductor-dropletutils/conda_build_config.yaml b/recipes/bioconductor-dropletutils/conda_build_config.yaml new file mode 100644 index 0000000000000..d3da287204f8d --- /dev/null +++ b/recipes/bioconductor-dropletutils/conda_build_config.yaml @@ -0,0 +1,2 @@ +r_base: + - 3.5.1 diff --git a/recipes/bioconductor-dropletutils/meta.yaml b/recipes/bioconductor-dropletutils/meta.yaml new file mode 100644 index 0000000000000..96949e202fdfe --- /dev/null +++ b/recipes/bioconductor-dropletutils/meta.yaml @@ -0,0 +1,65 @@ +{% set version = "1.0.3" %} +{% set name = "DropletUtils" %} +{% set bioc = "3.7" %} + +package: + name: 'bioconductor-{{ name|lower }}' + version: '{{ version }}' +source: + url: + - 'http://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' + - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' + - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz' + sha256: 63eb07ea6a35a6b52b8990209ce9b0cec5960ecee70e940dd689f2b9a08412ef +build: + number: 0 + rpaths: + - lib/R/lib/ + - lib/ +requirements: + host: + - 'bioconductor-beachmat >=1.2.1,<1.4.0' + - 'bioconductor-biobase >=2.40.0,<2.42.0' + - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' + - 'bioconductor-edger >=3.22.4,<3.24.0' + - 'bioconductor-rhdf5 >=2.24.0,<2.26.0' + - 'bioconductor-rhdf5lib >=1.2.1,<1.4.0' + - 'bioconductor-s4vectors >=0.18.3,<0.20.0' + - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' + - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' + - 'bioconductor-genomeinfodb >=1.16.0' + - 'bioconductor-genomeinfodbdata >=1.1.0' + - r-base + - r-dplyr + - r-matrix + - 'r-rcpp >=0.12.14' + run: + - 'bioconductor-beachmat >=1.2.1,<1.4.0' + - 'bioconductor-biobase >=2.40.0,<2.42.0' + - 'bioconductor-biocgenerics >=0.26.0,<0.28.0' + - 'bioconductor-edger >=3.22.4,<3.24.0' + - 'bioconductor-rhdf5 >=2.24.0,<2.26.0' + - 'bioconductor-rhdf5lib >=1.2.1,<1.4.0' + - 'bioconductor-s4vectors >=0.18.3,<0.20.0' + - 'bioconductor-singlecellexperiment >=1.2.0,<1.4.0' + - 'bioconductor-summarizedexperiment >=1.10.1,<1.12.0' + - 'bioconductor-genomeinfodb >=1.16.0' + - 'bioconductor-genomeinfodbdata >=1.1.0' + - r-base + - r-matrix + - r-plyr + - 'r-rcpp >=0.12.14' + build: + - {{ compiler('c') }} + - {{ compiler('cxx') }} + - make +test: + commands: + - '$R -e "library(''{{ name }}'')"' +about: + home: 'http://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' + license: 'GPL (>= 2)' + summary: 'Utilities for Handling Single-Cell Droplet Data.' +extra: + identifiers: + - biotools:DropletUtils