From 72ad548b946d77fe49bcd13e2383059179dc5a05 Mon Sep 17 00:00:00 2001
From: Joshua Zhuang <71105179+mencian@users.noreply.github.com>
Date: Tue, 12 Nov 2024 18:04:35 -0600
Subject: [PATCH] Rebuild bayestyper recipe (#52077)

* Rebuild bayestyper recipe

* Update bayestyper.patch

* Update meta.yaml

* Update meta.yaml
---
 recipes/bayestyper/bayestyper.patch |  4 ++--
 recipes/bayestyper/meta.yaml        | 10 ++++++----
 2 files changed, 8 insertions(+), 6 deletions(-)

diff --git a/recipes/bayestyper/bayestyper.patch b/recipes/bayestyper/bayestyper.patch
index 58c2be00de657..b7355e3da4a50 100644
--- a/recipes/bayestyper/bayestyper.patch
+++ b/recipes/bayestyper/bayestyper.patch
@@ -21,8 +21,8 @@ index c8a6142..beddd90 100755
  SET(LIBRARY_OUTPUT_PATH ${CMAKE_SOURCE_DIR}/lib)
  
  include_directories(${CMAKE_SOURCE_DIR}/include/vcf++ ${Boost_INCLUDE_DIRS})
-+message(STATUS "====== DEBUG Boost_INCLUDE_DIRS: " ${Boost_INCLUDE_DIRS})
-+message(STATUS "====== DEBUG Boost_LIB_DIRS: " ${Boost_LIB_DIRS})
++message(STATUS "======= DEBUG Boost_INCLUDE_DIRS: " ${Boost_INCLUDE_DIRS})
++message(STATUS "======= DEBUG Boost_LIB_DIRS: " ${Boost_LIB_DIRS})
  link_directories(${Boost_LIB_DIRS})
  
  add_library(${PROJECT_NAME} VcfFile.cpp Variant.cpp Allele.cpp VcfMetaData.cpp AttributeSet.cpp Sample.cpp Utils.cpp Attribute.cpp JoiningString.cpp Stats.cpp AttributeFilter.cpp SampleAlleleAttributeFilter.cpp FastaReader.cpp FastaRecord.cpp Auxiliaries.cpp Trio.cpp Contig.cpp Regions.cpp)
diff --git a/recipes/bayestyper/meta.yaml b/recipes/bayestyper/meta.yaml
index 198b607f0e82e..88a72501f760c 100644
--- a/recipes/bayestyper/meta.yaml
+++ b/recipes/bayestyper/meta.yaml
@@ -15,7 +15,7 @@ source:
     - stdafx.patch  # [osx]
 
 build:
-  number: 2
+  number: 3
   run_exports:
     - {{ pin_subpackage('bayestyper', max_pin="x") }}
 
@@ -42,9 +42,11 @@ test:
   commands:
     - bayesTyper | grep "BayesTyper"
     - bayesTyperTools | grep "BayesTyperTools"
-  identifiers:
-    - biotools:bayestyper
-    - doi:10.1038/s41588-018-0145-5
+
+extra:
   additional-platforms:
     - linux-aarch64
     - osx-arm64
+  identifiers:
+    - biotools:bayestyper
+    - doi:10.1038/s41588-018-0145-5