From 63fa5658dcc16ba3252699a23e5042eca48d3f19 Mon Sep 17 00:00:00 2001 From: Devon Ryan Date: Sun, 13 Jan 2019 00:37:12 +0100 Subject: [PATCH] A few version updates (#13059) --- build-fail-blacklist | 9 +-------- recipes/bioconductor-pga/meta.yaml | 9 +++++++-- recipes/bioconductor-proteoqc/meta.yaml | 9 +++++++-- recipes/bioconductor-sapfinder/meta.yaml | 9 +++++++-- recipes/bioconductor-shinytandem/meta.yaml | 9 +++++++-- 5 files changed, 29 insertions(+), 16 deletions(-) diff --git a/build-fail-blacklist b/build-fail-blacklist index 66250d4837cd2..c77241e27c31b 100644 --- a/build-fail-blacklist +++ b/build-fail-blacklist @@ -845,9 +845,6 @@ recipes/bioconductor-diffbind/2.0.9 recipes/bioconductor-diffbind/2.2.12 recipes/bioconductor-xcms/1.52.0 -# post-link error -# recipes/bioconductor-primirtss - # r-dagitity missing -> missing of V8 in cf recipes/r-pcalg recipes/bioconductor-epinem @@ -900,9 +897,6 @@ recipes/bioconductor-mapkl # Missing r-hiver recipes/bioconductor-moonlightr -# Missing r-rclipboard -# recipes/bioconductor-prostar - # package ‘rjags’ could not be loaded (linking issue) recipes/bioconductor-madseq @@ -972,11 +966,10 @@ recipes/bioconductor-icheck # Compilation errors (and dependencies) # recipes/bioconductor-ggtree -# recipes/bioconductor-rtandem +# recipes/bioconductor-sapfinder # recipes/bioconductor-shinytandem # recipes/bioconductor-pga # recipes/bioconductor-proteoqc -# recipes/bioconductor-sapfinder recipes/bioconductor-bgmix recipes/bioconductor-singlecelltk recipes/bioconductor-philr diff --git a/recipes/bioconductor-pga/meta.yaml b/recipes/bioconductor-pga/meta.yaml index a0210cbab21ac..586dcb9bc1a57 100644 --- a/recipes/bioconductor-pga/meta.yaml +++ b/recipes/bioconductor-pga/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.12.0" %} +{% set version = "1.12.1" %} {% set name = "PGA" %} {% set bioc = "3.8" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: f1a70d32276232c239cf7fe5ff102cb9 + md5: 9d81a4174770180665ff1d6e06fc45ae build: number: 0 rpaths: @@ -68,4 +68,9 @@ about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-2 summary: 'This package provides functions for construction of customized protein databases based on RNA-Seq data with/without genome guided, database searching, post-processing and report generation. This kind of customized protein database includes both the reference database (such as Refseq or ENSEMBL) and the novel peptide sequences form RNA-Seq data.' +extra: + parent_recipe: + name: bioconductor-pga + path: recipes/bioconductor-pga + version: 1.12.0 diff --git a/recipes/bioconductor-proteoqc/meta.yaml b/recipes/bioconductor-proteoqc/meta.yaml index 03824d09b95fc..6c413bf6452ca 100644 --- a/recipes/bioconductor-proteoqc/meta.yaml +++ b/recipes/bioconductor-proteoqc/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.18.0" %} +{% set version = "1.18.1" %} {% set name = "proteoQC" %} {% set bioc = "3.8" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: c733881810b96aa22096e2c290c5799d + md5: d8b9baf4fbe7c1615a3afc90c4dfbce5 build: number: 0 rpaths: @@ -58,4 +58,9 @@ about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: LGPL-2 summary: 'This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.' +extra: + parent_recipe: + name: bioconductor-proteoqc + path: recipes/bioconductor-proteoqc + version: 1.18.0 diff --git a/recipes/bioconductor-sapfinder/meta.yaml b/recipes/bioconductor-sapfinder/meta.yaml index e51ab9bfb84cc..a591491606f11 100644 --- a/recipes/bioconductor-sapfinder/meta.yaml +++ b/recipes/bioconductor-sapfinder/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.1" %} {% set name = "sapFinder" %} {% set bioc = "3.8" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 39da7f2c1d2a4832b64cee25d9bdc6b2 + md5: 1d4171bf15a1a4b7eb67ef1154f37abe build: number: 0 rpaths: @@ -39,4 +39,9 @@ about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-2 summary: 'sapFinder is developed to automate (1) variation-associated database construction, (2) database searching, (3) post-processing, (4) HTML-based report generation in shotgun proteomics.' +extra: + parent_recipe: + name: bioconductor-sapfinder + path: recipes/bioconductor-sapfinder + version: 1.20.0 diff --git a/recipes/bioconductor-shinytandem/meta.yaml b/recipes/bioconductor-shinytandem/meta.yaml index 5527b0e4c5420..297b9a218d0ca 100644 --- a/recipes/bioconductor-shinytandem/meta.yaml +++ b/recipes/bioconductor-shinytandem/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.20.0" %} +{% set version = "1.20.1" %} {% set name = "shinyTANDEM" %} {% set bioc = "3.8" %} @@ -10,7 +10,7 @@ source: - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz' - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz' - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz' - md5: 7ebddfcdaff66bac03d0982c93f572d5 + md5: 214390e95f00e0aa251e71caae2f37c9 build: number: 0 rpaths: @@ -37,4 +37,9 @@ about: home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html' license: GPL-3 summary: 'This package provides a GUI interface for rTANDEM. The GUI is primarily designed to visualize rTANDEM result object or result xml files. But it will also provides an interface for creating parameter objects, launching searches or performing conversions between R objects and xml files.' +extra: + parent_recipe: + name: bioconductor-shinytandem + path: recipes/bioconductor-shinytandem + version: 1.20.0