diff --git a/recipes/r-ngsplot/build.sh b/recipes/r-ngsplot/build.sh new file mode 100644 index 0000000000000..63d91bc0bcbe9 --- /dev/null +++ b/recipes/r-ngsplot/build.sh @@ -0,0 +1,11 @@ +#!/bin/bash +outdir=$PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM +mkdir -p $outdir +mkdir -p $PREFIX/bin +cp -R * $outdir +#Set up links for +for f in $outdir/*; do + ln -s $outdir/* $PREFIX/bin + fbname=$(basename "$f") + chmod 0755 ${PREFIX}/bin/$fbname +done \ No newline at end of file diff --git a/recipes/r-ngsplot/meta.yaml b/recipes/r-ngsplot/meta.yaml new file mode 100644 index 0000000000000..9c570c1f1de8f --- /dev/null +++ b/recipes/r-ngsplot/meta.yaml @@ -0,0 +1,41 @@ +{% set version = "2.63" %} +package: + name: r-ngsplot + version: {{ version }} + +source: + url: https://github.com/shenlab-sinai/ngsplot/archive/{{ version }}.tar.gz + md5: 811815e5f5ef7bdc1cb028ecd59fb2a7 + +build: + number: 0 + skip: True + rpaths: + - lib/R/lib/ + - lib/ + +requirements: + + run: + - r-base + - r-catools + - r-domc + - bioconductor-rsamtools + - bioconductor-bsgenome + - bioconductor-shortread + +test: + commands: + - ngsplotdb.py list | true + - ngs.plot.r 2>&1 | true + - replot.r 2>&1 | true + - plotCorrGram.r 2>&1 | true + +about: + license: GPL-2.0 + summary: 'Quick mining and visualization of NGS data by integrating genomic databases' + home: https://github.com/shenlab-sinai/ngsplot + +extra: + identifiers: + - doi:10.1186/1471-2164-15-284