From 44ea979a195d7d89d6432e5eb5500889b167fc07 Mon Sep 17 00:00:00 2001
From: Nick Youngblut <nyoungb2@gmail.com>
Date: Sun, 29 Jul 2018 16:38:14 +0200
Subject: [PATCH] Add r-ggrasp (#10129)

* Add r-ggrasp

* trivial change to restart checks now the r-bgmm is on conda-forge
---
 recipes/r-ggrasp/build.sh  |  8 ++++++
 recipes/r-ggrasp/meta.yaml | 56 ++++++++++++++++++++++++++++++++++++++
 2 files changed, 64 insertions(+)
 create mode 100644 recipes/r-ggrasp/build.sh
 create mode 100644 recipes/r-ggrasp/meta.yaml

diff --git a/recipes/r-ggrasp/build.sh b/recipes/r-ggrasp/build.sh
new file mode 100644
index 0000000000000..50bee029a649a
--- /dev/null
+++ b/recipes/r-ggrasp/build.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+if [[ $target_platform =~ linux.* ]] || [[ $target_platform == win-32 ]] || [[ $target_platform == win-64 ]] || [[ $target_platform == osx-64 ]]; then
+  export DISABLE_AUTOBREW=1
+  $R CMD INSTALL --build .
+else
+  mkdir -p $PREFIX/lib/R/library/ggrasp
+  mv * $PREFIX/lib/R/library/ggrasp
+fi
diff --git a/recipes/r-ggrasp/meta.yaml b/recipes/r-ggrasp/meta.yaml
new file mode 100644
index 0000000000000..320ba7929db6a
--- /dev/null
+++ b/recipes/r-ggrasp/meta.yaml
@@ -0,0 +1,56 @@
+{% set version = '1.0' %}
+{% set posix = '' %}
+{% set native = '' %}
+
+package:
+  name: r-ggrasp
+  version: {{ version|replace("-", "_") }}
+
+source:
+  url: {{ cran_mirror }}/src/contrib/ggrasp_{{ version }}.tar.gz
+  sha256: 0133019df762cd19d7daf1b5f2b353c43568124ade6e34fa04837656138a3652
+
+build:
+  number: 0
+  rpaths:
+    - lib/R/lib/
+    - lib/
+
+requirements:
+  build:
+  host:
+    - r-base
+    - r-ape
+    - r-bgmm
+    - r-colorspace
+    - r-ggplot2
+    - r-mixtools
+  run:
+    - r-base
+    - r-ape
+    - r-bgmm
+    - r-colorspace
+    - r-ggplot2
+    - r-mixtools
+
+test:
+  commands:
+    - $R -e "library('ggrasp')"
+
+about:
+  home: https://CRAN.R-project.org/package=ggrasp
+  license: GPL-2
+  summary: 'Given a group of genomes and their relationship with each other, the package clusters
+    the genomes and selects the most representative members of each cluster. Additional
+    data can be provided to the prioritize certain genomes. The results can be printed
+    out as a list or a new phylogeny with graphs of the trees and distance distributions
+    also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac,
+    Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative
+    genomes using Gaussian mixture models, Bioinformatics, bty300, 
+    <doi:10.1093/bioinformatics/bty300>.'
+  license_family: GPL2
+  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-2'
+
+extra:
+  recipe-maintainers:
+    - nick-youngblut