From 3dadfe427d4ab22113befae55aef552bdd14b34c Mon Sep 17 00:00:00 2001 From: Bioconda Bot <47040946+BiocondaBot@users.noreply.github.com> Date: Mon, 28 Oct 2024 20:02:33 -0400 Subject: [PATCH] Update quota_anchor to 0.0.1a1 (#51585) * Update quota_anchor to 0.0.1a1 * Update dependencies * edit tests * add alive-progress --------- Co-authored-by: mencian Co-authored-by: Joshua Zhuang <71105179+mencian@users.noreply.github.com> --- recipes/quota_anchor/build.sh | 3 ++- recipes/quota_anchor/meta.yaml | 14 ++++++++------ 2 files changed, 10 insertions(+), 7 deletions(-) diff --git a/recipes/quota_anchor/build.sh b/recipes/quota_anchor/build.sh index 71922513c1169..1688e70c760a7 100644 --- a/recipes/quota_anchor/build.sh +++ b/recipes/quota_anchor/build.sh @@ -1,5 +1,6 @@ #!/bin/bash -$PYTHON -m pip install --no-deps --ignore-installed . -vv + +$PYTHON -m pip install --no-deps --no-build-isolation --no-cache-dir . -vvv echo "[software] gffread = ${PREFIX}/bin/gffread AnchorWave = ${PREFIX}/bin/anchorwave diff --git a/recipes/quota_anchor/meta.yaml b/recipes/quota_anchor/meta.yaml index bd563736d46b1..275adc67bc319 100644 --- a/recipes/quota_anchor/meta.yaml +++ b/recipes/quota_anchor/meta.yaml @@ -1,6 +1,6 @@ {% set name = "quota_anchor" %} -{% set version = "0.0.1a0" %} -{% set sha256 = "01d8520825fee67f8c73803d3bbe7855291592c064cd2d5712d02e104a71a8fa" %} +{% set version = "0.0.1a1" %} +{% set sha256 = "b6eb3ba82a32a8a5e238615dac6ef0eeef5de0d584643132b903dcddb94e760d" %} package: name: {{ name }} @@ -19,7 +19,8 @@ build: requirements: host: - python >=3 - - pip + - pip + - setuptools run: - python >=3 - gffread @@ -33,18 +34,19 @@ requirements: - pal2nal - paml - plotnine - - seaborn + - seaborn-base - pandas - numpy - + - alive-progress test: commands: - - 'quota_Anchor 2>&1 | grep "usage: quota_Anchor"' + - 'quota_Anchor -h' about: home: https://github.com/baoxingsong/quota_Anchor license: MIT + license_family: MIT summary: 'Strand and WGD aware syntenic gene identification' description: "Strand and WGD aware syntenic gene identification for comparative genomics" dev_url: https://github.com/baoxingsong/quota_Anchor