From 300aeadad63ed7587e454da9fb7bf6b912e3d1ee Mon Sep 17 00:00:00 2001
From: Francesco strino <francesco.strino@pcmgf.com>
Date: Sat, 19 Oct 2024 10:31:01 +0100
Subject: [PATCH] Add gene-trajectory-python recipe (#51476)

---
 recipes/gene-trajectory-python/LICENSE   | 21 ++++++++
 recipes/gene-trajectory-python/meta.yaml | 62 ++++++++++++++++++++++++
 2 files changed, 83 insertions(+)
 create mode 100644 recipes/gene-trajectory-python/LICENSE
 create mode 100644 recipes/gene-trajectory-python/meta.yaml

diff --git a/recipes/gene-trajectory-python/LICENSE b/recipes/gene-trajectory-python/LICENSE
new file mode 100644
index 0000000000000..bfa86556228dd
--- /dev/null
+++ b/recipes/gene-trajectory-python/LICENSE
@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2024 PCMGF-Limited
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.
diff --git a/recipes/gene-trajectory-python/meta.yaml b/recipes/gene-trajectory-python/meta.yaml
new file mode 100644
index 0000000000000..33d13f239c17c
--- /dev/null
+++ b/recipes/gene-trajectory-python/meta.yaml
@@ -0,0 +1,62 @@
+{% set name = "gene-trajectory-python" %}
+{% set version = "1.0.4" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.org/packages/source/{{ name[0] }}/gene-trajectory/gene_trajectory-{{ version }}.tar.gz
+  sha256: 133e22dd167cbc83b8d4ecffa98bfc623f98584b91d2ecf31b915aeb11072b73
+
+build:
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  number: 0
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x") }}
+
+requirements:
+  host:
+    - python >=3.9,<4.0a0
+    - flit-core >=3.2,<4
+    - pip
+  run:
+    - python >=3.9
+    - python-igraph >=0.10
+    - matplotlib-base >=3.6
+    - numpy >=1.25
+    - pandas >=1.5
+    - pot >=0.8.2
+    - scanpy >=1.9.3
+    - scikit-misc >=0.1.3
+    - scikit-learn >=0.24
+    - scipy >=1.8
+    - seaborn >=0.13
+    - tqdm >=4.64.1
+
+test:
+  imports:
+    - gene_trajectory
+  commands:
+    - pip check
+    - python -c "import gene_trajectory"
+  requires:
+    - pip
+
+about:
+  home: https://github.com/KlugerLab/GeneTrajectory-python
+  summary: Compute gene trajectories
+  description: |
+    Gene Trajectory is a Python package that computes and analyzes gene trajectories in single-cell data.
+    It provides tools for trajectory inference, gene expression analysis along trajectories, and visualization of results.
+
+  license: MIT
+  license_file: LICENSE
+  doc_url: https://github.com/KlugerLab/GeneTrajectory-python
+  dev_url: https://github.com/KlugerLab/GeneTrajectory-python
+
+
+extra:
+  recipe-maintainers:
+    - fra-pcmgf