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build_failure.osx-64.yaml
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recipe_sha: 5270553cf7c144e518ed02eb2b63fbeeac38ce449aef132499010fdf816b979a # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |2-
license: MIT
license_file: LICENSE.txt
summary: YAHMM is a HMM package for Python, implemented in Cython for speed.
extra:
container:
extended-base: true
copy_test_source_files: true
final: true
skip-lints:
- cython_must_be_in_host
source tree in: /opt/mambaforge/envs/bioconda/conda-bld/yahmm_1734714151065/work
export PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/yahmm_1734714151065/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol
export BUILD_PREFIX=/opt/mambaforge/envs/bioconda/conda-bld/yahmm_1734714151065/_build_env
export SRC_DIR=/opt/mambaforge/envs/bioconda/conda-bld/yahmm_1734714151065/work
INFO: activate_clang_osx-64.sh made the following environmental changes:
AR=x86_64-apple-darwin13.4.0-ar
AS=x86_64-apple-darwin13.4.0-as
CC=x86_64-apple-darwin13.4.0-clang
CC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/yahmm-1.1.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
CHECKSYMS=x86_64-apple-darwin13.4.0-checksyms
CLANG=x86_64-apple-darwin13.4.0-clang
CMAKE_ARGS=-DCMAKE_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_CXX_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_C_COMPILER_AR=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ar -DCMAKE_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_CXX_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_C_COMPILER_RANLIB=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ranlib -DCMAKE_LINKER=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-ld -DCMAKE_STRIP=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-strip -DCMAKE_INSTALL_NAME_TOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-install_name_tool -DCMAKE_LIBTOOL=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-libtool -DCMAKE_OSX_DEPLOYMENT_TARGET=10.15 -DCMAKE_BUILD_TYPE=Release -DCMAKE_OSX_SYSROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk -DCMAKE_FIND_FRAMEWORK=LAST -DCMAKE_FIND_APPBUNDLE=LAST -DCMAKE_INSTALL_PREFIX=$PREFIX -DCMAKE_INSTALL_LIBDIR=lib -DCMAKE_PROGRAM_PATH=$BUILD_PREFIX/bin;$PREFIX/bin
CMAKE_PREFIX_PATH=:$PREFIX
CONDA_TOOLCHAIN_BUILD=x86_64-apple-darwin13.4.0
CONDA_TOOLCHAIN_HOST=x86_64-apple-darwin13.4.0
CPP=x86_64-apple-darwin13.4.0-clang-cpp
CPPFLAGS=-D_FORTIFY_SOURCE=2 -isystem $PREFIX/include -mmacosx-version-min=10.15
CPP_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang-cpp
DEBUG_CFLAGS=-march=core2 -mtune=haswell -mssse3 -ftree-vectorize -fPIC -fstack-protector-strong -O2 -pipe -Og -g -Wall -Wextra -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/yahmm-1.1.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
HOST=x86_64-apple-darwin13.4.0
INSTALL_NAME_TOOL=x86_64-apple-darwin13.4.0-install_name_tool
LD=x86_64-apple-darwin13.4.0-ld
LDFLAGS=-Wl,-headerpad_max_install_names -Wl,-dead_strip_dylibs -Wl,-rpath,$PREFIX/lib -L$PREFIX/lib
LDFLAGS_LD=-headerpad_max_install_names -dead_strip_dylibs -rpath $PREFIX/lib -L$PREFIX/lib
LIBTOOL=x86_64-apple-darwin13.4.0-libtool
LIPO=x86_64-apple-darwin13.4.0-lipo
MESON_ARGS=-Dbuildtype=release --prefix=$PREFIX -Dlibdir=lib
NM=x86_64-apple-darwin13.4.0-nm
NMEDIT=x86_64-apple-darwin13.4.0-nmedit
OBJC=x86_64-apple-darwin13.4.0-clang
OBJC_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-apple-darwin13.4.0-clang
OTOOL=x86_64-apple-darwin13.4.0-otool
PAGESTUFF=x86_64-apple-darwin13.4.0-pagestuff
RANLIB=x86_64-apple-darwin13.4.0-ranlib
REDO_PREBINDING=x86_64-apple-darwin13.4.0-redo_prebinding
SDKROOT=/Applications/Xcode_15.2.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.15.sdk
SEGEDIT=x86_64-apple-darwin13.4.0-segedit
SEG_ADDR_TABLE=x86_64-apple-darwin13.4.0-seg_addr_table
SEG_HACK=x86_64-apple-darwin13.4.0-seg_hack
SIZE=x86_64-apple-darwin13.4.0-size
STRINGS=x86_64-apple-darwin13.4.0-strings
STRIP=x86_64-apple-darwin13.4.0-strip
_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_apple_darwin13_4_0
ac_cv_func_malloc_0_nonnull=yes
ac_cv_func_realloc_0_nonnull=yes
build_alias=x86_64-apple-darwin13.4.0
host_alias=x86_64-apple-darwin13.4.0
Using pip 24.3.1 from $PREFIX/lib/python3.11/site-packages/pip (python 3.11)
Non-user install because user site-packages disabled
Ignoring indexes: https://pypi.org/simple
Created temporary directory: /private/tmp/pip-build-tracker-_d4xc6vs
Initialized build tracking at /private/tmp/pip-build-tracker-_d4xc6vs
Created build tracker: /private/tmp/pip-build-tracker-_d4xc6vs
Entered build tracker: /private/tmp/pip-build-tracker-_d4xc6vs
Created temporary directory: /private/tmp/pip-install-us1qv8n5
Created temporary directory: /private/tmp/pip-ephem-wheel-cache-xjw71gd0
Processing $SRC_DIR
Added file://$SRC_DIR to build tracker '/private/tmp/pip-build-tracker-_d4xc6vs'
Running setup.py (path:$SRC_DIR/setup.py) egg_info for package from file://$SRC_DIR
Created temporary directory: /private/tmp/pip-pip-egg-info-gnbiqcgq
Preparing metadata (setup.py): started
Preparing metadata (setup.py): finished with status 'done'
Source in $SRC_DIR has version 1.1.3, which satisfies requirement yahmm==1.1.3 from file://$SRC_DIR
Removed yahmm==1.1.3 from file://$SRC_DIR from build tracker '/private/tmp/pip-build-tracker-_d4xc6vs'
Created temporary directory: /private/tmp/pip-unpack-gua39h9y
Building wheels for collected packages: yahmm
Created temporary directory: /private/tmp/pip-wheel-piivg19k
Building wheel for yahmm (setup.py): started
Destination directory: /private/tmp/pip-wheel-piivg19k
Building wheel for yahmm (setup.py): finished with status 'error'
Running setup.py clean for yahmm
Failed to build yahmm
Exception information:
Traceback (most recent call last):
File "$PREFIX/lib/python3.11/site-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
status = _inner_run()
^^^^^^^^^^^^
File "$PREFIX/lib/python3.11/site-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
return self.run(options, args)
^^^^^^^^^^^^^^^^^^^^^^^
File "$PREFIX/lib/python3.11/site-packages/pip/_internal/cli/req_command.py", line 67, in wrapper
return func(self, options, args)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "$PREFIX/lib/python3.11/site-packages/pip/_internal/commands/install.py", line 434, in run
raise InstallationError(
pip._internal.exceptions.InstallationError: ERROR: Failed to build installable wheels for some pyproject.toml based projects (yahmm)
Removed build tracker: '/private/tmp/pip-build-tracker-_d4xc6vs'
# Last 100 lines of the build log.
category: |-
compiler error