meta.yaml

{% set name = "trtools" %}
{% set version = "6.1.0" %}

package:
  name: "{{ name|lower }}"
  version: "{{ version }}"

source:
  url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz
  sha256: 3a177cf19060945eff4044f16d5ebdc66364e72a8a3c9bd725086ba10003df96

build:
  noarch: python
  entry_points:
    - dumpSTR=trtools.dumpSTR:run
    - mergeSTR=trtools.mergeSTR:run
    - statSTR=trtools.statSTR:run
    - compareSTR=trtools.compareSTR:run
    - qcSTR=trtools.qcSTR:run
    - associaTR=trtools.associaTR:run
    - prancSTR = trtools.prancSTR:run
    - simTR = trtools.simTR:run
    - annotaTR = trtools.annotaTR:run
  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
  number: 0
  run_exports:
    - {{ pin_subpackage('trtools', max_pin="x") }}

requirements:
  host:
    - python >=3.7.1,<4.0
    - poetry-core >=1.0.0
    - pip >=20.3
  run:
    - python >=3.7.1,<4.0
    - cyvcf2 >=0.30.27
    - matplotlib-base >=3.1.2
    - numpy >=1.17.3
    - pandas >=1.2.0
    - pysam >=0.15.4
    - scikit-learn >=0.23.1
    - scipy >=1.3.3
    - statsmodels >=0.10.2
    - pyfaidx >=0.5.6
    - ART >=2016.06.05
    - pgenlib >=0.90.1

test:
  imports:
    - trtools
    - trtools.associaTR
    - trtools.compareSTR
    - trtools.dumpSTR
    - trtools.mergeSTR
    - trtools.qcSTR
    - trtools.statSTR
    - trtools.prancSTR
    - trtools.simTR
    - trtools.annotaTR
    - trtools.utils
  requires:
    - bcftools
    - git
    - pytest
    - htslib
  commands:
    - associaTR --help
    - dumpSTR --help
    - mergeSTR --help
    - statSTR --help
    - compareSTR --help
    - qcSTR --help
    - prancSTR --help
    - simTR --help
    - annotaTR --help

about:
  home: https://github.com/gymreklab/TRTools
  license: MIT
  license_family: MIT
  license_file: LICENSE.txt
  summary: Toolkit for genome-wide analysis of tandem repeats
  doc_url: https://trtools.readthedocs.io/
  dev_url: https://github.com/gymreklab/TRTools

extra:
  recipe-maintainers:
    - LiterallyUniqueLogin
    - aryarm
  identifiers:
    - biotools:trtools
    - doi:10.1093/bioinformatics/btaa736
  additional-platforms:
    - osx-arm64
    - linux-aarch64