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build_failure.osx-64.yaml
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recipe_sha: 9925d0a10636e2fe20640885123ce78039f9af65632e0d692dac0ab0be228660 # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
[ 25%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FDtest.c.o
[ 25%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FDwindows.c.o
File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/simka_1733975769628/work/conda_build.sh']' returned non-zero exit status 2.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/mambaforge/envs/bioconda/bin/conda-build", line 11, in <module>
sys.exit(execute())
[ 26%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FL.c.o
[ 26%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FO.c.o
[ 26%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FS.c.o
File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute
[ 26%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FScache.c.o
api.build(
[ 26%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FSdbg.c.o
[ 26%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FSint.c.o
[ 27%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FSsection.c.o
[ 27%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FSstat.c.o
[ 27%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5FStest.c.o
File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build
return build_tree(
[ 27%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5G.c.o
[ 28%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gbtree2.c.o
[ 28%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gcache.c.o
[ 28%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gcompact.c.o
[ 28%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gdense.c.o
[ 28%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gdeprec.c.o
File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
packages_from_this = build(
[ 29%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gent.c.o
[ 29%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gint.c.o
[ 29%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Glink.c.o
File "/opt/mambaforge/envs/bioconda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
raise BuildScriptException(str(exc), caused_by=exc) from exc
[ 29%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gloc.c.o
[ 29%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gname.c.o
[ 30%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gnode.c.o
[ 30%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gobj.c.o
[ 30%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Goh.c.o
[ 30%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Groot.c.o
[ 30%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gstab.c.o
[ 31%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gtest.c.o
[ 31%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Gtraverse.c.o
conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/mambaforge/envs/bioconda/conda-bld/simka_1733975769628/work/conda_build.sh']' returned non-zero exit status 2.
[ 31%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HF.c.o
[ 31%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFbtree2.c.o
[ 32%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFcache.c.o
[ 32%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFdbg.c.o
[ 32%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFdblock.c.o
[ 32%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFdtable.c.o
[ 32%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFhdr.c.o
[ 33%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFhuge.c.o
[ 33%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFiblock.c.o
[ 33%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFiter.c.o
[ 33%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFman.c.o
[ 33%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFsection.c.o
[ 34%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFspace.c.o
[ 34%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFstat.c.o
[ 34%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFtest.c.o
[ 34%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HFtiny.c.o
[ 35%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HG.c.o
[ 35%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HGcache.c.o
[ 35%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HGdbg.c.o
[ 35%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HGquery.c.o
[ 35%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HL.c.o
[ 36%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HLcache.c.o
[ 36%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HLdbg.c.o
[ 36%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HLdblk.c.o
[ 36%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HLint.c.o
[ 36%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HLprfx.c.o
[ 37%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5HP.c.o
[ 37%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5I.c.o
[ 37%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Itest.c.o
[ 37%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5L.c.o
[ 37%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Lexternal.c.o
[ 38%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MF.c.o
[ 38%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MFaggr.c.o
[ 38%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MFdbg.c.o
[ 38%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MFsection.c.o
[ 39%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MM.c.o
[ 39%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MP.c.o
[ 39%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5MPtest.c.o
[ 39%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5O.c.o
[ 39%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Oainfo.c.o
[ 40%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Oalloc.c.o
[ 40%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Oattr.c.o
[ 40%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Oattribute.c.o
[ 40%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Obogus.c.o
[ 40%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Obtreek.c.o
[ 41%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Ocache.c.o
[ 41%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Ocache_image.c.o
[ 41%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Ochunk.c.o
[ 41%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Ocont.c.o
[ 42%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Ocopy.c.o
[ 42%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Odbg.c.o
[ 42%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Odeprec.c.o
[ 42%] Building C object ext/gatb-core/thirdparty/hdf5/src/CMakeFiles/hdf5-static.dir/H5Odrvinfo.c.o
# Last 100 lines of the build log.