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build_failure.linux-aarch64.yaml
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recipe_sha: d38a2fc1a49f21bddae0215bab20f7b1a5e50c38781cef4a8c9ec1c2ddb97639 # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/seqinfo.o seqinfo.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/showseqstats.o showseqstats.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/shrub.o shrub.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/simplecluster.o simplecluster.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/spatter.o spatter.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/stripgappy.o stripgappy.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/stripgappyrows.o stripgappyrows.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/strip_anchors.o strip_anchors.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/substmxfromfile.o substmxfromfile.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/super6.o super6.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/super7.o super7.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/super7_mega.o super7_mega.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/sw.o sw.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/swdistmx.o swdistmx.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/sweep.o sweep.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/sweeper.o sweeper.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/swmasm.o swmasm.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/swmasm_seq.o swmasm_seq.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/test.o test.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/test_malloc.o test_malloc.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/test_mega.o test_mega.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/tracebackbitmem.o tracebackbitmem.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/transalnref.o transalnref.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/tree.o tree.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/tree2.o tree2.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/tree4.o tree4.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/treefromfile.o treefromfile.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/treetofile.o treetofile.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/pairhmm.o pairhmm.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/progalnflat.o progalnflat.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/project.o project.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/qscore_oldcode.o qscore_oldcode.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/qscore2.o qscore2.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/qscorer.o qscorer.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/quarts.o quarts.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/refineflat.o refineflat.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/relaxflat.o relaxflat.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/seb8.o seb8.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/sequence.o sequence.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/setprobconsparams.o setprobconsparams.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/seq.o seq.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/stripgappycols.o stripgappycols.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/super4.o super4.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/super5.o super5.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/testfb.o testfb.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/testlog.o testlog.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/testscoretype.o testscoretype.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/textfile.o textfile.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/totalprobflat.o totalprobflat.cpp
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$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/transaln.o transaln.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/transq.o transq.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/treeperm.o treeperm.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/treesplitter.o treesplitter.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/treesubsetnodes.o treesubsetnodes.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/trimtoref.o trimtoref.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/trimtorefefa.o trimtorefefa.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/uclust.o uclust.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/uclustpd.o uclustpd.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/uclustpd2.o uclustpd2.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/upgma5.o upgma5.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/upgma5_msa.o upgma5_msa.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/usage.o usage.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/usorter.o usorter.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/muscle-5.3 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -ffast-math -march=native -O3 -DNDEBUG -fopenmp -c -o o/viterbifastmem.o viterbifastmem.cpp
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib -ffast-math -march=native -O3 -fopenmp -static o/addconfseq.o o/align.o o/alignmsasbycols.o o/alnmsasflat_mega.o o/blosumsmx.o o/bwdflat_mega.o o/calcpost.o o/cmd_cmp_msa.o o/cmd_m3ensemble.o o/cmd_mustang_core.o o/cmd_newbench_pfamgroups.o o/cmd_newbench_selectpfams.o o/cmd_squeeze_inserts.o o/cmp_ref_msas.o o/enumpaths.o o/fwdflat_mega.o o/getpostpairsalignedflat_mega.o o/hscore.o o/loadinput.o o/logaln_masm.o o/pathscorer.o o/swenumdp.o o/swer.o o/swmasm_megaprof.o o/swps.o o/swsimple.o o/swsimple2.o o/swtest.o o/swtester.o o/swtestmm.o o/test_sw_aa.o o/test_sw_mm.o o/viterbimega.o o/writelocalaln.o o/m3alnparams.o o/alignpairflat.o o/allocflat.o o/alnalnsflat.o o/alnmsasbypath.o o/alnmsasflat.o o/alnmsasflat3.o o/alnprof3sbypath.o o/alpha2.o o/alpha3.o o/alpha6.o o/assertsameseqs.o o/bench.o o/cmd_bench.o o/bittraceback.o o/blosum.o o/clustalweights.o o/cmd_batch.o o/cmd_muscle3.o o/enumgrid.o o/estring.o o/build_guide_tree.o o/calcalnscoresparse.o o/eesort.o o/gtbnode.o o/heatmapcolors.o o/jalview.o o/kimuradist.o o/kmerdist33.o o/kmerdist66.o o/letterconf.o o/diagbox.o o/buildposterior3flat.o o/buildpostflat.o o/bwdflat3.o o/calcalnflat.o o/calcalnscoreflat.o o/calcposteriorflat.o o/conspairflat.o o/consflat.o o/defaulthmmparams.o o/derep.o o/disperse.o o/dividetree.o o/eacluster.o o/efabestcols.o o/efabestconf.o o/efaexplode.o o/efastats.o o/ensemble.o o/fa2efa.o o/fwdflat3.o o/getpairs.o o/getpostpairsalignedflat.o o/letterconfhtml.o o/logdistmx.o o/logmx.o o/m3refine.o o/m3select.o o/make_a2m.o o/make_a2m_refseq.o o/make_substmx.o o/masm.o o/masm_train.o o/maxcc.o o/mega_msas.o o/mpcflat.o o/eadistmx.o o/eadistmxmsas.o o/fasta.o o/fasta2.o o/mpcflat_mega.o o/msaselfscore3.o o/muscle3.o o/mx.o o/myalloc.o o/mysparsemx.o o/nwsmall3.o o/objmgr.o o/pathinfo.o o/perturbhmm.o o/getconsseq.o o/globalinputms.o o/guidetreejoinorder.o o/hmmdump.o o/hmmparams.o o/jointrees.o o/logaln.o o/main.o o/msastats.o o/multisequence.o o/permutetree.o o/pprog.o o/pprog2.o o/pprog3.o o/pprogt.o o/pprog_mega.o o/pprog_tree.o o/probcons.o o/msa.o o/msa2.o o/myutils.o o/colscoreefa.o o/profalign.o o/profile3.o o/masmcol.o o/mega.o o/profpos3.o o/profprof3.o o/profseq.o o/protdist.o o/protdistpair.o o/protdists.o o/qscore.o o/qscoreefa.o o/qscorer2.o o/randomchaintree.o o/randomdistmx.o o/relabel.o o/repredict.o o/resample.o o/runthreads.o o/scoretest.o o/searchpd.o o/seqinfo.o o/showseqstats.o o/shrub.o o/simplecluster.o o/spatter.o o/stripgappy.o o/stripgappyrows.o o/strip_anchors.o o/substmxfromfile.o o/super6.o o/super7.o o/super7_mega.o o/sw.o o/swdistmx.o o/sweep.o o/sweeper.o o/swmasm.o o/swmasm_seq.o o/test.o o/test_malloc.o o/test_mega.o o/tracebackbitmem.o o/transalnref.o o/tree.o o/tree2.o o/tree4.o o/treefromfile.o o/treetofile.o o/pairhmm.o o/progalnflat.o o/project.o o/qscore_oldcode.o o/qscore2.o o/qscorer.o o/quarts.o o/refineflat.o o/relaxflat.o o/seb8.o o/sequence.o o/setprobconsparams.o o/seq.o o/stripgappycols.o o/super4.o o/super5.o o/testfb.o o/testlog.o o/testscoretype.o o/textfile.o o/totalprobflat.o o/tracebackflat.o o/transaln.o o/transq.o o/treeperm.o o/treesplitter.o o/treesubsetnodes.o o/trimtoref.o o/trimtorefefa.o o/uclust.o o/uclustpd.o o/uclustpd2.o o/upgma5.o o/upgma5_msa.o o/usage.o o/usorter.o o/viterbifastmem.o -o ../bin/muscle
/opt/conda/conda-bld/muscle_1734271562715/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/../../../../aarch64-conda-linux-gnu/bin/ld: /opt/conda/conda-bld/muscle_1734271562715/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/libgomp.a(oacc-profiling.o): in function goacc_profiling_initialize':
/home/conda/feedstock_root/build_artifacts/gcc_compilers_1724798803082/work/build/aarch64-conda-linux-gnu/libgomp/../../../libgomp/oacc-profiling.c:137:(.text0x6f4): undefined reference to dlopen'
/opt/conda/conda-bld/muscle_1734271562715/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/../../../../aarch64-conda-linux-gnu/bin/ld: /home/conda/feedstock_root/build_artifacts/gcc_compilers_1724798803082/work/build/aarch64-conda-linux-gnu/libgomp/../../../libgomp/oacc-profiling.c:152:(.text0x708): undefined reference to dlerror'
/opt/conda/conda-bld/muscle_1734271562715/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/../../../../aarch64-conda-linux-gnu/bin/ld: /home/conda/feedstock_root/build_artifacts/gcc_compilers_1724798803082/work/build/aarch64-conda-linux-gnu/libgomp/../../../libgomp/oacc-profiling.c:156:(.text0x728): undefined reference to dlclose'
/opt/conda/conda-bld/muscle_1734271562715/_build_env/bin/../lib/gcc/aarch64-conda-linux-gnu/13.3.0/../../../../aarch64-conda-linux-gnu/bin/ld: /home/conda/feedstock_root/build_artifacts/gcc_compilers_1724798803082/work/build/aarch64-conda-linux-gnu/libgomp/../../../libgomp/oacc-profiling.c:141:(.text0x740): undefined reference to dlsym'
collect2: error: ld returned 1 exit status
make: *** [Makefile:343: ../bin/muscle] Error 1
ERROR -- make failed
Traceback (most recent call last):
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build
utils.check_call_env(
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env
return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/muscle_1734271562715/work/conda_build.sh']' returned non-zero exit status 1.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/conda/bin/conda-build", line 11, in <module>
sys.exit(execute())
File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute
api.build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build
return build_tree(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
packages_from_this = build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
raise BuildScriptException(str(exc), caused_by=exc) from exc
conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/muscle_1734271562715/work/conda_build.sh']' returned non-zero exit status 1.
# Last 100 lines of the build log.
category: |-
compiler error