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build_failure.linux-aarch64.yaml
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recipe_sha: c3225b7c93a12eda94539d2841bdb50fa341dc0b84bf5425e4b0a7872bacbfc7 # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
src/VectorView.h:42:50: error: 'uint16_t' was not declared in this scope
42 | friend unsigned __int128 hash(VectorView<uint16_t> sequence, VectorView<uint16_t> reverseSequence);
| ^~~~~~~~
src/VectorView.h:42:50: note: 'uint16_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
src/VectorView.h:42:58: error: template argument 1 is invalid
42 | friend unsigned __int128 hash(VectorView<uint16_t> sequence, VectorView<uint16_t> reverseSequence);
| ^
src/VectorView.h:42:81: error: 'uint16_t' was not declared in this scope
42 | friend unsigned __int128 hash(VectorView<uint16_t> sequence, VectorView<uint16_t> reverseSequence);
| ^~~~~~~~
src/VectorView.h:42:81: note: 'uint16_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
src/VectorView.h:42:89: error: template argument 1 is invalid
42 | friend unsigned __int128 hash(VectorView<uint16_t> sequence, VectorView<uint16_t> reverseSequence);
| ^
$BUILD_PREFIX/bin/aarch64-conda-linux-gnu-c -c -o obj/FastHasher.o src/FastHasher.cpp -fvisibility-inlines-hidden -fmessage-length=0 -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O3 -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/mbg-1.0.16 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wall -Wextra -std=c17 -O3 -g -Izstr/src -Iparallel-hashmap/parallel_hashmap/ -Wno-unused-parameter -Icxxopts/include -Iconcurrentqueue pkg-config --cflags zlib
src/MBGCommon.cpp: In function 'HashType hash(VectorView<short unsigned int>)':
src/MBGCommon.cpp:13:51: error: 'const std::vector<short unsigned int>& VectorView<short unsigned int>::data' is private within this context
13 | VectorView<uint16_t> firstHalf { sequence.data, sequence.startpos, sequence.startpos half };
| ^~~~
src/VectorView.h:38:31: note: declared private here
38 | const std::vector<T>& data;
| ^~~~
src/MBGCommon.cpp:13:66: error: 'size_t VectorView<short unsigned int>::startpos' is private within this context
13 | VectorView<uint16_t> firstHalf { sequence.data, sequence.startpos, sequence.startpos half };
| ^~~~~~~~
src/VectorView.h:39:16: note: declared private here
39 | size_t startpos;
| ^~~~~~~~
src/MBGCommon.cpp:13:85: error: 'size_t VectorView<short unsigned int>::startpos' is private within this context
13 | VectorView<uint16_t> firstHalf { sequence.data, sequence.startpos, sequence.startpos half };
| ^~~~~~~~
src/VectorView.h:39:16: note: declared private here
39 | size_t startpos;
| ^~~~~~~~
src/MBGCommon.cpp: In function 'HashType hash(VectorView<short unsigned int>, VectorView<short unsigned int>)':
src/MBGCommon.cpp:30:51: error: 'const std::vector<short unsigned int>& VectorView<short unsigned int>::data' is private within this context
30 | VectorView<uint16_t> firstHalf { sequence.data, sequence.startpos, sequence.startpos half };
| ^~~~
src/VectorView.h:38:31: note: declared private here
38 | const std::vector<T>& data;
| ^~~~
src/MBGCommon.cpp:30:66: error: 'size_t VectorView<short unsigned int>::startpos' is private within this context
30 | VectorView<uint16_t> firstHalf { sequence.data, sequence.startpos, sequence.startpos half };
| ^~~~~~~~
src/VectorView.h:39:16: note: declared private here
39 | size_t startpos;
| ^~~~~~~~
src/MBGCommon.cpp:30:85: error: 'size_t VectorView<short unsigned int>::startpos' is private within this context
30 | VectorView<uint16_t> firstHalf { sequence.data, sequence.startpos, sequence.startpos half };
| ^~~~~~~~
src/VectorView.h:39:16: note: declared private here
39 | size_t startpos;
| ^~~~~~~~
src/MBGCommon.cpp:31:59: error: 'const std::vector<short unsigned int>& VectorView<short unsigned int>::data' is private within this context
31 | VectorView<uint16_t> secondHalf { reverseSequence.data, reverseSequence.startpos, reverseSequence.startpos half };
| ^~~~
src/VectorView.h:38:31: note: declared private here
38 | const std::vector<T>& data;
| ^~~~
src/MBGCommon.cpp:31:81: error: 'size_t VectorView<short unsigned int>::startpos' is private within this context
31 | VectorView<uint16_t> secondHalf { reverseSequence.data, reverseSequence.startpos, reverseSequence.startpos half };
| ^~~~~~~~
src/VectorView.h:39:16: note: declared private here
39 | size_t startpos;
| ^~~~~~~~
src/MBGCommon.cpp:31:107: error: 'size_t VectorView<short unsigned int>::startpos' is private within this context
31 | VectorView<uint16_t> secondHalf { reverseSequence.data, reverseSequence.startpos, reverseSequence.startpos half };
| ^~~~~~~~
src/VectorView.h:39:16: note: declared private here
39 | size_t startpos;
| ^~~~~~~~
make: *** [makefile:45: obj/MBGCommon.o] Error 1
make: *** Waiting for unfinished jobs....
src/MBG.cpp: In function 'void runMBG(const std::vector<std::__cxx11::basic_string<char> >&, const std::string&, size_t, size_t, size_t, double, ErrorMasking, size_t, bool, const std::string&, size_t, bool, size_t, const std::string&, const std::string&, bool, double, bool, bool, bool, const std::string&, bool, bool)':
src/MBG.cpp:1540:14: warning: variable 'beforeReading' set but not used [-Wunused-but-set-variable]
1540 | auto beforeReading = getTime();
| ^~~~~~~~~~~~~
Traceback (most recent call last):
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build
utils.check_call_env(
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env
return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/mbg_1734270837794/work/conda_build.sh']' returned non-zero exit status 2.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/conda/bin/conda-build", line 11, in <module>
sys.exit(execute())
File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute
api.build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build
return build_tree(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
packages_from_this = build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
raise BuildScriptException(str(exc), caused_by=exc) from exc
conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/mbg_1734270837794/work/conda_build.sh']' returned non-zero exit status 2.
# Last 100 lines of the build log.
category: |-
compiler error