meta.yaml

{% set blast_version = "2.12.0" %}

package:
  name: maker
  version: 3.01.03

source:
  url: http://weatherby.genetics.utah.edu/maker_downloads/static/maker-3.01.03.tgz
  sha256: f36cc7ef584c215955a4d9fdd46287a49f7508bbe59c6fe78d50e0c6e99192ae
  patches:
    - "repeatmasker_check.patch"
    - "mpi_init.patch"

build:
  number: 3

requirements:
  build:
    - {{ compiler('c') }}
  host:
    - perl
    - perl-bioperl-core >=1.7.8
    - perl-bit-vector
    - perl-dbd-pg
    - perl-dbd-sqlite
    - perl-dbi
    - perl-io-all
    - perl-io-prompt
    - perl-inline-c >=0.78
    - perl-perlio-gzip
    - perl-forks
    - perl-perl-unsafe-signals
    - mpich
  run:
    - augustus >=3.2.3
    - blast {{ blast_version }}
    - exonerate
    - evidencemodeler
    - repeatmasker >=4.1.1
    - rmblast {{ blast_version }} # blast and rmblast must be pinned to the same version as they share some libraries
    - snap
    - snoscan
    - perl
    - perl-bioperl-core >=1.7.8
    - perl-bit-vector
    - perl-dbd-pg
    - perl-dbd-sqlite
    - perl-dbi
    - perl-io-all
    - perl-io-prompt
    - perl-inline-c >=0.78
    - perl-perlio-gzip
    - perl-forks
    - perl-perl-unsafe-signals
    - mpich
    - rapsearch # [not osx]
    - trnascan-se
    - postgresql
    # GeneMarkS, GeneMark-ES and FGENESH are optional requirements but are not free

about:
  home: http://www.yandell-lab.org/software/maker.html
  license: GPL3
  license_file: LICENSE
  summary: MAKER is a portable and easily configurable genome annotation pipeline.

test:
  commands:
    - maker --version

extra:
  container:
    # mpich needs /etc/resolv.conf : https://github.com/bioconda/bioconda-recipes/issues/11583
    extended-base: true
  identifiers:
    - biotools:maker
    - usegalaxy-eu:maker