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build_failure.linux-64.yaml
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recipe_sha: c1e459d9a9e46455b50fdbb717e93c3139408e565f05df8b5b13317c3c4a7d79 # The hash of the recipe's meta.yaml at which this recipe failed to build.
skiplist: true # Set to true to skiplist this recipe so that it will be ignored as long as its latest commit is the one given above.
log: |-
CMAKE_PREFIX_PATH=$PREFIX:$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot/usr
CONDA_BUILD_SYSROOT=$BUILD_PREFIX/x86_64-conda-linux-gnu/sysroot
CONDA_TOOLCHAIN_BUILD=x86_64-conda-linux-gnu
CONDA_TOOLCHAIN_HOST=x86_64-conda-linux-gnu
CPP=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-cpp
CPPFLAGS=-DNDEBUG -D_FORTIFY_SOURCE=2 -O2 -isystem $PREFIX/include
DEBUG_CFLAGS=-march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/elector-1.0.4 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
DEBUG_CPPFLAGS=-D_DEBUG -D_FORTIFY_SOURCE=2 -Og -isystem $PREFIX/include
GCC=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc
GCC_AR=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ar
GCC_NM=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-nm
GCC_RANLIB=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-gcc-ranlib
HOST=x86_64-conda-linux-gnu
LDFLAGS=-Wl,-O2 -Wl,--sort-common -Wl,--as-needed -Wl,-z,relro -Wl,-z,now -Wl,--disable-new-dtags -Wl,--gc-sections -Wl,--allow-shlib-undefined -Wl,-rpath,$PREFIX/lib -Wl,-rpath-link,$PREFIX/lib -L$PREFIX/lib
MESON_ARGS=-Dbuildtype=release --prefix=$PREFIX -Dlibdir=lib
_CONDA_PYTHON_SYSCONFIGDATA_NAME=_sysconfigdata_x86_64_conda_cos6_linux_gnu
build_alias=x86_64-conda-linux-gnu
host_alias=x86_64-conda-linux-gnu
-BUILD=x86_64-conda_cos6-linux-gnu
-CONDA_BUILD_SYSROOT=
INFO: activate-gxx_linux-64.sh made the following environmental changes:
CXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/elector-1.0.4 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
CXX_FOR_BUILD=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c
DEBUG_CXXFLAGS=-fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-all -fno-plt -Og -g -Wall -Wextra -fvar-tracking-assignments -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/elector-1.0.4 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix
GXX=$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-g
mkdir -p /opt/conda/conda-bld/elector_1734287004874/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/bin/
cd src/simulator
make
$BUILD_PREFIX/bin/x86_64-conda-linux-gnu-c -o simulator.o -c simulator.cpp -fvisibility-inlines-hidden -fmessage-length=0 -march=nocona -mtune=haswell -ftree-vectorize -fPIC -fstack-protector-strong -fno-plt -O2 -ffunction-sections -pipe -isystem $PREFIX/include -fdebug-prefix-map=$SRC_DIR=/usr/local/src/conda/elector-1.0.4 -fdebug-prefix-map=$PREFIX=/usr/local/src/conda-prefix -Wall -Wextra -Ofast -std=c11 -pthread -pipe -Isparsepp
simulator.cpp:15:1: error: 'uint32_t' does not name a type
15 | uint32_t xs(uint32_t& y){
| ^~~~~~~~
simulator.cpp:6:1: note: 'uint32_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
5 | #include <vector>
|#include <cstdint>
6 |
simulator.cpp: In function 'char randNucle(char)':
simulator.cpp:25:17: error: 'xs' was not declared in this scope
25 | switch (xs(seed)%4){
| ^~
simulator.cpp: In function 'int main(int, char**)':
simulator.cpp:131:25: error: 'uint64_t' was not declared in this scope
131 | uint64_t nucProduced(0);
| ^~~~~~~~
simulator.cpp:131:25: note: 'uint64_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
simulator.cpp:132:31: error: 'nucProduced' was not declared in this scope
132 | while(nucProduced<(uint64_t)(coverage*ref.size())){
| ^~~~~~~~~~~
simulator.cpp:137:41: error: expected ';' before 'position'
137 | uint64_t position=xs(seed)%ref.size();
| ^~~~~~~~~
| ;
simulator.cpp:138:36: error: 'position' was not declared in this scope
138 | if(positionlength<=ref.size()){
| ^~~~~~~~
simulator.cpp:140:46: warning: unused variable 'error' [-Wunused-variable]
140 | uint error(0);
| ^~~~~
simulator.cpp:165:33: error: expected ';' before 'nucProducedSR'
165 | uint64_t nucProducedSR(0);
| ^~~~~~~~~~~~~~
| ;
simulator.cpp:166:31: error: 'nucProducedSR' was not declared in this scope
166 | while(nucProducedSR<(uint64_t)(coverageSR*ref.size())){
| ^~~~~~~~~~~~~
simulator.cpp:170:41: error: expected ';' before 'position'
170 | uint64_t position=xs(seed)%ref.size();
| ^~~~~~~~~
| ;
simulator.cpp:171:36: error: 'position' was not declared in this scope
171 | if(positionlength<=ref.size()){
| ^~~~~~~~
simulator.cpp:177:52: error: 'xs' was not declared in this scope
177 | if(xs(seed)%10000<=errorRateSR){
| ^~
make: *** [makefile:27: simulator.o] Error 1
Traceback (most recent call last):
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2558, in build
utils.check_call_env(
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 404, in check_call_env
return _func_defaulting_env_to_os_environ("call", *popenargs, **kwargs)
File "/opt/conda/lib/python3.10/site-packages/conda_build/utils.py", line 380, in _func_defaulting_env_to_os_environ
raise subprocess.CalledProcessError(proc.returncode, _args)
subprocess.CalledProcessError: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/elector_1734287004874/work/conda_build.sh']' returned non-zero exit status 2.
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/opt/conda/bin/conda-build", line 11, in <module>
sys.exit(execute())
File "/opt/conda/lib/python3.10/site-packages/conda_build/cli/main_build.py", line 589, in execute
api.build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/api.py", line 209, in build
return build_tree(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 3712, in build_tree
packages_from_this = build(
File "/opt/conda/lib/python3.10/site-packages/conda_build/build.py", line 2566, in build
raise BuildScriptException(str(exc), caused_by=exc) from exc
conda_build.exceptions.BuildScriptException: Command '['/bin/bash', '-o', 'errexit', '/opt/conda/conda-bld/elector_1734287004874/work/conda_build.sh']' returned non-zero exit status 2.
# Last 100 lines of the build log.