Releases: biocodellc/biocode-lims
Releases · biocodellc/biocode-lims
v3.0.2 (7 December 2016)
- Added Country (GenBank) and Lat/Long (GenBank) fields for use with submission to GenBank
- Fixed column width in plate bulk editor when running on Windows with a HiDPI display
- Fixed a crash that occurs when connecting to a Google Fusion Tables account that has no fusion tables
- Fixed a crash when running Verify Taxonomy with Geneious R10
v3.0.1 (15 September 2016)
- Fixed a crash that occurred when saving a display template that did not have a chosen "label wells by" field
- Fixed bug that caused "Mark as Submitted in LIMS" to incorrectly say sequence did not exist
v3.0.0 (9 June 2016)
- 'BOLD Trace submission': New function to create packages for submission of traces to BOLD.
- Added the ability to create extraction plates from tissue documents.
- Search performance improvements.
- Faster download of sequences. Download of workflow documents is no longer required when downloading sequences.
- The # Traces, # Sequences, # Passed Sequences and Sequence Progress fields now show up for workflow documents.
- Added an operation to the plate bulk editor that allows for the importing of extraction barcodes from FIMS.
- Added the ability to export tables to .xls, .csv and .tsv.
- Increased the maximum number of individual reactions from 26 to 30.
- Added advanded option to New Plate operation for copying reactions to a custom plate format (individual reactions only)
- Added new Gel Quantification reaction type
- Download Traces from LIMS can now work on a selection of passed sequences
- Download Traces from LIMS can now re-assemble traces to selected sequences
- You can now search for reference assemblies of traces to passed sequences in the Biocode service.
- Many other bug fixes and improvements.
Additional Notes
This version includes an update to the LIMS database format. This version is not compatible with older versions of the LIMS plugin. All users of the database will need to update the LIMS plugin to the latest version.
- Built-in MySQL users will be upgraded automatically.
- Remote MySQL users will need their database administrator to upgrade their database before using this version of the plugin.
The schema upgrade script can be found at http://software.mooreabiocode.org/index.php?title=Download
v2.8.12 - Private Release
- Updated to work with 2016 New Biocode FIMS changes
v2.8.11 (4 September 2015)
- Fixed a crash that occurs when viewing the Reporting service in Geneious 8.1 or later.
- Fixed a crash that occurs when using the Bulk Editor to fetch PCR or Cycle Sequencing reactions from extraction barcodes.
- Fixed an error that prevented the use of compound queries that searched across both FIMS and LIMS fields.
- Changed default Moorea FIMS connection URL to gall.bnhm.berkeley.edu from darwin.berkeley.edu.
v2.99.4
MBP-633 LIMS Server can't recover from being disconnected from database get rid of disconnectCheckingThread for biocode server, and still use dbcp of 1.4