FileNotFoundError: [Errno 2] No such file or directory: Database__SGB2GTDB.tsv'[BUG]

[dywang0323]

Hi,

I run the command like below:
sgb_to_gtdb_profile.py -i /ourdisk/hpc/nullspace/dywang/dont_archive/CHOICE/Genome/metaphlan/metaphlan_M/CHO59M.fq.txt -o /ourdisk/hpc/prebiotics/dywang/Projects/CHOICE/Metagenome/PREPROCESS/CHO59M.txt -d /ourdisk/hpc/prebiotics/dywang/Software/Database_meta

But frequently get the error like:
Traceback (most recent call last):
File "/home/dywang/.local/bin/sgb_to_gtdb_profile.py", line 8, in
sys.exit(main())
File "/home/dywang/.local/lib/python3.9/site-packages/metaphlan/utils/sgb_to_gtdb_profile.py", line 97, in main
get_gtdb_profile(args.input, args.output, database_controller.get_database_name())
File "/home/dywang/.local/lib/python3.9/site-packages/metaphlan/utils/sgb_to_gtdb_profile.py", line 55, in get_gtdb_profile
with open(os.path.join(os.path.dirname(os.path.abspath(file)), "{}_SGB2GTDB.tsv".format(database)), 'r') as read_file:
FileNotFoundError: [Errno 2] No such file or directory: '/home/dywang/.local/lib/python3.9/site-packages/metaphlan/utils/Database__SGB2GTDB.tsv'

[github-actions]

Thank you for creating this issue.
We currently field issues through our bioBakery Discourse Support Forum.
If you would please post the issue to discourse we would be happy to sync up with you to get it resolved.