Installing PEER

[bnorthoff]

Hi, I've tried using PPER 1.3 in R3.6 on a SLES15 Server. By running R CMD INSTALL R_peer_source_1.3.tgz to install from the source package I get the error message :

make: *** [/home/user/bin/R-3.6.0/lib64/R/etc/Makeconf:174: array_helper.o] Fehler 1
ERROR: compilation failed for package ‘peer’

I have also tried to install from scratch. To this end I have installed SWIG 3.0.12-4.18, numpy and scipy. I am using GCC7, cmake 3.10.2 and make 4.21.

cmake ../.

CMake Deprecation Warning at /usr/share/cmake/Modules/UseSWIG.cmake:231 (message):
SWIG_ADD_MODULE is deprecated. Use SWIG_ADD_LIBRARY instead.
Call Stack (most recent call first):
python/CMakeLists.txt:92 (swig_add_module)

-- Looking for R executable
-- Looking for R_HOME
-- R_HOME is /home/user/bin/R-3.6.0/lib64/R
-- Looking for R include files
-- Include files should be at /home/user/bin/R-3.6.0/lib64/R/include. Checking for R.h
-- Found at /home/user/bin/R-3.6.0/lib64/R/include/R.h
-- Exists at /home/user/bin/R-3.6.0/lib64/R/lib/libR.so
-- Checking whether we should link against Rlapack library
-- Yes, /home/user/bin/R-3.6.0/lib64/R/lib/libRlapack.so exists
-- Checking whether we should link against Rblas library
-- Yes, /home/user/bin/R-3.6.0/lib64/R/lib/libRblas.so exists
-- Checking for R package library location to use
-- Will use /home/user/bin/R-3.6.0/lib64/R/library
CMake Deprecation Warning at /usr/share/cmake/Modules/UseSWIG.cmake:231 (message):
SWIG_ADD_MODULE is deprecated. Use SWIG_ADD_LIBRARY instead.
Call Stack (most recent call first):
R/CMakeLists.txt:28 (swig_add_module)

-- Configuring done
-- Generating done
-- Build files have been written to: /home/user/BioInf/tools/peer/build

make
...

make[2]: *** [src/CMakeFiles/peerlib.dir/build.make:63: src/CMakeFiles/peerlib.dir/bayesnet.cpp.o] Fehler 1
make[1]: *** [CMakeFiles/Makefile2:196: src/CMakeFiles/peerlib.dir/all] Fehler 2
make: *** [Makefile:130: all] Fehler 2

Do you have any suggestion how to continue?
Best,

Bernd

[Xuhang01]

Hi Bernd,

I get the same error when installing PEER. Have you solve this problem?

Best,
XU Hang