From 33ff2fce0cdc4fd5168ef2d476321ee06db84b32 Mon Sep 17 00:00:00 2001
From: "Luis M. Rodriguez-R" <lmrodriguezr@gmail.com>
Date: Mon, 15 Apr 2024 23:39:17 +0200
Subject: [PATCH] Prevent incomplete AAI/ANI tables

---
 lib/miga/version.rb        |  2 +-
 scripts/aai_distances.bash | 14 +++++---------
 scripts/ani_distances.bash | 14 +++++---------
 3 files changed, 11 insertions(+), 19 deletions(-)

diff --git a/lib/miga/version.rb b/lib/miga/version.rb
index a07c386..ce9735a 100644
--- a/lib/miga/version.rb
+++ b/lib/miga/version.rb
@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 14, 5].freeze
+  VERSION = [1.3, 14, 6].freeze
 
   ##
   # Nickname for the current major.minor version.
diff --git a/scripts/aai_distances.bash b/scripts/aai_distances.bash
index 8368139..e909f50 100755
--- a/scripts/aai_distances.bash
+++ b/scripts/aai_distances.bash
@@ -31,15 +31,11 @@ function aai_tsv {
   fi
 }
 
-if [[ ! -s "miga-project.txt.gz" ]] ; then
-  rm -f "miga-project.txt"
-  aai_tsv | tee >(wc -l | awk '{print $1-1}' > "miga-project.txt.lno") \
-    | gzip -9c > "miga-project.txt.gz"
-  LNO=$(cat "miga-project.txt.lno")
-  rm "miga-project.txt.lno"
-else
-  LNO=$(gzip -cd "miga-project.txt.gz" | wc -l | awk '{print $1-1}')
-fi
+rm -f "miga-project.txt"
+aai_tsv | tee >(wc -l | awk '{print $1-1}' > "miga-project.txt.lno") \
+  | gzip -9c > "miga-project.txt.gz"
+LNO=$(cat "miga-project.txt.lno")
+rm "miga-project.txt.lno"
 
 # R-ify
 cat <<R | R --vanilla
diff --git a/scripts/ani_distances.bash b/scripts/ani_distances.bash
index 0bab0fc..d0e1511 100755
--- a/scripts/ani_distances.bash
+++ b/scripts/ani_distances.bash
@@ -25,15 +25,11 @@ function ani_tsv {
   foreach_database_ani
 }
 
-if [[ ! -s "miga-project.txt.gz" ]] ; then
-  rm -f "miga-project.txt"
-  ani_tsv | tee >(wc -l | awk '{print $1-1}' > "miga-project.txt.lno") \
-    | gzip -9c > "miga-project.txt.gz"
-  LNO=$(cat "miga-project.txt.lno")
-  rm "miga-project.txt.lno"
-else
-  LNO=$(gzip -cd "miga-project.txt.gz" | wc -l | awk '{print $1-1}')
-fi
+rm -f "miga-project.txt"
+ani_tsv | tee >(wc -l | awk '{print $1-1}' > "miga-project.txt.lno") \
+  | gzip -9c > "miga-project.txt.gz"
+LNO=$(cat "miga-project.txt.lno")
+rm "miga-project.txt.lno"
 
 # R-ify
 cat <<R | R --vanilla