From 21125bd19fc9c6fbd6cdab50473c2266cbe68199 Mon Sep 17 00:00:00 2001
From: "Luis M. Rodriguez-R" <lmrodriguezr@gmail.com>
Date: Sun, 11 Feb 2024 16:43:14 +0100
Subject: [PATCH] New option `miga get --bypass-metadata`

---
 lib/miga/cli/action/get.rb | 5 +++++
 lib/miga/remote_dataset.rb | 1 +
 lib/miga/version.rb        | 4 ++--
 3 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/lib/miga/cli/action/get.rb b/lib/miga/cli/action/get.rb
index a5ae993..9e106f9 100644
--- a/lib/miga/cli/action/get.rb
+++ b/lib/miga/cli/action/get.rb
@@ -61,6 +61,10 @@ def parse_cli
         '--only-metadata',
         'Create datasets without input data but retrieve all metadata'
       ) { |v| cli[:only_md] = v }
+      opt.on(
+        '--bypass-metadata',
+        'Do not gather optional metadata such as the dataset taxonomy'
+      ) { |v| cli[:bypass_md] = v }
       opt.on(
         '--api-key STRING',
         'API key for the given universe'
@@ -75,6 +79,7 @@ def perform
       rd = create_remote_dataset(sub_cli, p)
       next if rd.nil?
 
+      rd.metadata[:bypass_metadata] = true if sub_cli[:bypass_md]
       if sub_cli[:get_md]
         update_metadata(sub_cli, p, rd)
       else
diff --git a/lib/miga/remote_dataset.rb b/lib/miga/remote_dataset.rb
index f7f757e..c81570f 100644
--- a/lib/miga/remote_dataset.rb
+++ b/lib/miga/remote_dataset.rb
@@ -188,6 +188,7 @@ def update_metadata(dataset, metadata = {})
   # Get metadata from the remote location.
   def get_metadata(metadata_def = {})
     metadata_def.each { |k, v| @metadata[k] = v }
+    return @metadata if @metadata[:bypass_metadata]
 
     case universe
     when :ebi, :ncbi, :web
diff --git a/lib/miga/version.rb b/lib/miga/version.rb
index 754835d..26da12d 100644
--- a/lib/miga/version.rb
+++ b/lib/miga/version.rb
@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 10, 3].freeze
+  VERSION = [1.3, 11, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 2, 8)
+  VERSION_DATE = Date.new(2024, 2, 11)
 
   ##
   # References of MiGA