From a278c146c6e684346eea54924799a0563c2d56d6 Mon Sep 17 00:00:00 2001
From: Manuel Holtgrewe <manuel.holtgrewe@bihealth.de>
Date: Mon, 23 Jan 2023 20:15:25 +0100
Subject: [PATCH] fix: zcat usage in bwa_mem2 wrapper

---
 snappy_wrappers/wrappers/bwa_mem2/wrapper.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/snappy_wrappers/wrappers/bwa_mem2/wrapper.py b/snappy_wrappers/wrappers/bwa_mem2/wrapper.py
index 98e0aa0ef..2b11850ff 100644
--- a/snappy_wrappers/wrappers/bwa_mem2/wrapper.py
+++ b/snappy_wrappers/wrappers/bwa_mem2/wrapper.py
@@ -64,7 +64,7 @@
     set -x
 
     if [[ -z "{input_right}" ]]; then
-        (zcat force {input_right})
+        (zcat {input_right})
     else
         seqtk mergepe \
             <(zcat {input_left} | tee >(wc -l > $TMPDIR/count_left)) \