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Is your feature request related to a problem? Please describe.
Tumor purity is important to have context for variant allele frequencies. The available wrapper for ascat is not in a stable state and output is not available for cbioportal-export.
Describe the solution you'd like
First, the wrapper for ascat needs to be tested. Second, the output needs to be available for cbioportal-export and that should be homogenous across different tools.
Describe alternatives you've considered
Other options for tools would be Theta2 or PureCN. Maybe a comparison of tools to understand robustness is necessary.
Additional context
None.
The text was updated successfully, but these errors were encountered:
Is your feature request related to a problem? Please describe.
Tumor purity is important to have context for variant allele frequencies. The available wrapper for ascat is not in a stable state and output is not available for cbioportal-export.
Describe the solution you'd like
First, the wrapper for ascat needs to be tested. Second, the output needs to be available for cbioportal-export and that should be homogenous across different tools.
Describe alternatives you've considered
Other options for tools would be Theta2 or PureCN. Maybe a comparison of tools to understand robustness is necessary.
Additional context
None.
The text was updated successfully, but these errors were encountered: